DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HnRNP-K and pcbp3

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:XP_012812157.1 Gene:pcbp3 / 448044 XenbaseID:XB-GENE-944665 Length:464 Species:Xenopus tropicalis


Alignment Length:484 Identity:106/484 - (21%)
Similarity:173/484 - (35%) Gaps:174/484 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYF 94
            |:|:|:.....|::|||.|:.::|||.:..|.:::.:...|||.|.::....:..:..:.::   
 Frog    15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFSMII--- 76

  Fly    95 EERDEDFD---------------VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQ 144
            ::.:||..               :||::..|..|.:|||||.||||||:..|.: ::|..::.|.
 Frog    77 DKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ-VQVAGDMLPN 140

  Fly   145 STDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRPSQ 209
            ||:|.:...|....:||.|:::..:..::|.||....|.|                     :|| 
 Frog   141 STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP---------------------KPS- 183

  Fly   210 RGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPFIN 274
                                                                       .:|.| 
 Frog   184 -----------------------------------------------------------SSPVI- 188

  Fly   275 PWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQAQG 339
                                  ||    ||......||.:...:.:.|..|..||.|.:.....|
 Frog   189 ----------------------FA----GGQVSRQAGGHACETDLWEGRRSHTGGVSLDAVDLHG 227

  Fly   340 TNSLPSLGSFSQNQGGTSSLPSL----GSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFN 400
            ..::.  |.::..|...:.|..|    ..|..:..|    ..|.|||.:....|           
 Frog   228 AYTIQ--GQYAIPQPDLTKLHQLAMQQSHFPMSHSG----NTGFSGGIDASAQT----------- 275

  Fly   401 AVGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEP 465
                                      .|.::|||.:|.|.|||:.|.:|..||..|.|.|.|..|
 Frog   276 --------------------------TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP 314

  Fly   466 LPNSNDRIITISGTPKQIQMAQYLLQQSV 494
            :..||||.:||:|:...|.:||||:..|:
 Frog   315 VEGSNDRQVTITGSTASISLAQYLINVSL 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 16/60 (27%)
PCBP_like_KH 103..167 CDD:239089 25/63 (40%)
pcbp3XP_012812157.1 PCBP_like_KH 15..76 CDD:239089 16/60 (27%)
PCBP_like_KH 99..163 CDD:239089 25/64 (39%)
KH_1 278..340 CDD:365809 29/61 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.