DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and pcbp2

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_957486.1 Gene:pcbp2 / 321844 ZFINID:ZDB-GENE-030131-563 Length:318 Species:Danio rerio


Alignment Length:479 Identity:99/479 - (20%)
Similarity:158/479 - (32%) Gaps:207/479 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYF 94
            |:|:|:.....|::|||.|:.::|||.:..|.:::.:...|||.|.::.   .|..|........
Zfish    15 TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG---PTTAIFKAFSMII 76

  Fly    95 EERDEDFD---------------VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQ 144
            |:.:||..               :|:::..|..|.:|||||.||||||:..|.: ::|..::.|.
Zfish    77 EKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQ-VQVAGDMLPN 140

  Fly   145 STDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRPSQ 209
            ||:|.:...|....:||.|:::..:..::|.||....|.|                     :|| 
Zfish   141 STERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRP---------------------KPS- 183

  Fly   210 RGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPFIN 274
                                                                             
Zfish   184 ----------------------------------------------------------------- 183

  Fly   275 PWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQA-- 337
                                                           |.|..|.|     |||  
Zfish   184 -----------------------------------------------GSPVIFAG-----GQAYA 196

  Fly   338 -QGTNSLPSLGSFSQNQGGTSSLPSLGSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNA 401
             ||.:::|        |...:.|..| :..|:|........|.:.|.:....|            
Zfish   197 VQGQHAIP--------QPDLTKLHQL-AMQQSPFPLAPSSQGFTAGMDASAQT------------ 240

  Fly   402 VGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPL 466
                                     .|.::|||.:|.|.|||:.|.:|..||..|.|.|.|..|:
Zfish   241 -------------------------GSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 280

  Fly   467 PNSNDRIITISGTPKQIQMAQYLL 490
            ..|:||.:||:|:|..|.:|:||:
Zfish   281 EGSSDRQVTITGSPASISLAEYLI 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 18/60 (30%)
PCBP_like_KH 103..167 CDD:239089 24/63 (38%)
pcbp2NP_957486.1 PCBP_like_KH 15..76 CDD:239089 18/63 (29%)
PCBP_like_KH 99..163 CDD:239089 24/64 (38%)
KH-I 242..304 CDD:238053 28/61 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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