DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and pes-4

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_497351.3 Gene:pes-4 / 175288 WormBaseID:WBGene00003978 Length:432 Species:Caenorhabditis elegans


Alignment Length:362 Identity:77/362 - (21%)
Similarity:128/362 - (35%) Gaps:99/362 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYF 94
            |:|:|:.....|::|||.|..|:|:|.:..|.:::.|...|||.:.|:..:....:....:...|
 Worm    73 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGTLGVIGKAFNMVCNKF 137

  Fly    95 EE---------RDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVV 150
            ||         ......:|:::..:..|.:|||||.|||:||:..|.. ::|.|.:.|.||:|.|
 Worm   138 EEDMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIREATGAS-IQVASEMLPHSTERAV 201

  Fly   151 QTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPM-NFDRVYADEYGGYGTGSGSTRPSQRGNNR 214
            ...|....:...:.:|..:..:.|.||:...|.|. .|:.:      ...|.:.:....|:....
 Worm   202 TLSGTADAINLCMTQVCQILLEAPPKGSTITYRPKPTFNPL------AIATSAATIAAQQQQAQA 260

  Fly   215 N---------GGGAG-----------------------GVAGGAA-------------------- 227
            .         |||.|                       .:|..||                    
 Worm   261 QQQLAAAALMGGGQGVQVQQQLVTNALLQQHQFAAVQQELAARAALFNQQLMMPGQQQQASQAQE 325

  Fly   228 ---GGNGGGFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMG----------QRDNPFIN----- 274
               |.:|..:.|.|.:  .||:..:......|..|.|....|          |:....:|     
 Worm   326 VYLGQHGLIYTANGVQ--LGGQDNSKAMEAGAAAAAAAQWQGYDMAAMQQQQQQQQQLLNQYALN 388

  Fly   275 -------PWANGG---GGDVDGFGNNAGGAGGFAGNS 301
                   |:..||   .|...|...::|.:...|..|
 Worm   389 QSMLIGAPFMKGGPTPPGTTSGKATSSGASAQGAATS 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 17/60 (28%)
PCBP_like_KH 103..167 CDD:239089 21/63 (33%)
pes-4NP_497351.3 PCBP_like_KH 73..134 CDD:239089 17/60 (28%)
PCBP_like_KH 154..218 CDD:239089 21/64 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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