DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and hrpk-1

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_740869.1 Gene:hrpk-1 / 172330 WormBaseID:WBGene00017816 Length:397 Species:Caenorhabditis elegans


Alignment Length:519 Identity:171/519 - (32%)
Similarity:225/519 - (43%) Gaps:172/519 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MKREM-NDEGEGPQDQKRNRRNEET---------VRILIPSSIAGAVIGKGGQHIQKMRTQYKAT 61
            ||||. ||:|:.....||.:.:..|         ||:|:.|..|||:|||||::|:::|.::.|.
 Worm    18 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAH 82

  Fly    62 VSVDDSQGPERTIQISADIESTLEIITEML----KYFEERDEDFDVRLLIHQSLAGCVIGKGGQK 122
            |.|.||..|||...::||.::.|.|:.::|    ..|.||| ..:||:|:|||.||.:||:.|.|
 Worm    83 VQVPDSNTPERVCTVTADEKTVLNILKDVLPRLEDNFSERD-PCEVRMLVHQSHAGALIGRNGSK 146

  Fly   123 IKEIRDRIGCRFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPIKGA------IHN 181
            |||:|::...| ||:|:..||.|||||:.|.|:|..|:..:.||:...::.||||:      ..|
 Worm   147 IKELREKCSAR-LKIFTGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFN 210

  Fly   182 YDPMNFDRVYADEYGGYGTGSGSTRPSQRGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGR 246
            |||.|.     .:|||:                                .|...|||...|   |
 Worm   211 YDPSNI-----SDYGGF--------------------------------PGNMPAGGPPNN---R 235

  Fly   247 GGADRFGGAAGGAVAGAGMGQRDNPFINPWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFG 311
            |.|.                ||                                   ||.|.|  
 Worm   236 GPAP----------------QR-----------------------------------GGQGPP-- 247

  Fly   312 GGSFGNNGFGGGPSDFGGNSGNFGQAQGTNSLPSLGSFSQNQGGTSSLPSLGSFGQNPGGPGGLG 376
                      |||..:||                    :..|||.......|.|.|..||||.:.
 Worm   248 ----------GGPRSYGG--------------------AITQGGGQRSFEAGDFQQFRGGPGPVP 282

  Fly   377 NGLSGGANGGVGTLGGANGAGGFNAVGGANGGPNGSPNAATNV-PQGHDPNNSTQVTIPKELAGA 440
                          |.|..|.|:....|..|.||   ||.... |.|..|..:.|||||.:|.|.
 Worm   283 --------------GYAMSAPGYPPQQGQFGAPN---NAGYGYGPGGGGPVTTAQVTIPSDLGGT 330

  Fly   441 IIGKGGGRIRRIRNESSAYITIDEPLPNSN---DRIITISGTPKQIQMAQYLLQQSVHEN--GR 499
            |||:||.||.|||.||.|.||:::    ||   :|||||.||.:||..|||||||.|..:  ||
 Worm   331 IIGRGGERIARIRQESGAQITLEQ----SNGQPERIITIKGTEQQIHSAQYLLQQCVRNSTQGR 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 27/69 (39%)
PCBP_like_KH 103..167 CDD:239089 32/63 (51%)
hrpk-1NP_740869.1 KH-I_HNRNPK_rpt1 49..112 CDD:411860 26/62 (42%)
KH-I_HNRNPK_rpt2 124..193 CDD:411861 33/69 (48%)
KH-I_HNRNPK_rpt3 316..388 CDD:411862 41/75 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159385
Domainoid 1 1.000 69 1.000 Domainoid score I6335
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 185 1.000 Inparanoid score I2615
Isobase 1 0.950 - 0 Normalized mean entropy S3915
OMA 1 1.010 - - QHG48676
OrthoDB 1 1.010 - - D394765at2759
OrthoFinder 1 1.000 - - FOG0005459
OrthoInspector 1 1.000 - - oto18089
orthoMCL 1 0.900 - - OOG6_105766
Panther 1 1.100 - - LDO PTHR10288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 1 1.000 - - X348
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.890

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