DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and LOC100359916

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:XP_038966947.1 Gene:LOC100359916 / 100359916 RGDID:2323128 Length:463 Species:Rattus norvegicus


Alignment Length:528 Identity:186/528 - (35%)
Similarity:238/528 - (45%) Gaps:129/528 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 RMKREMNDEGEGPQDQKRNRRNEETV--RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQ 68
            |...:|.:|    |..||:|..:|.|  |||:.|..|||||||||::|:.:||.|.|:|||.||.
  Rat    22 RPAEDMEEE----QAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSS 82

  Fly    69 GPERTIQISADIESTLEII----------------------------TEMLKYFEERDEDFD--V 103
            ||||.:.||||||:..||:                            .|.|.|...:..|||  :
  Rat    83 GPERILSISADIETIGEILKKIIPTLEEGLQLPSPAATSQLPLESDAVECLNYQHYKGSDFDCEL 147

  Fly   104 RLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVIT 168
            ||||||||||.:||..|.||||:|:..... :|:|....|.||||||...||..:|:|.::.::.
  Rat   148 RLLIHQSLAGGIIGVKGAKIKELRENTQTT-IKLFQECCPHSTDRVVLIGGKPDRVVECIKIILD 211

  Fly   169 LTRDTPIKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRPSQRGNNRNGGGAGGVAGGAAGGNGGG 233
            |..::||||....|||..:|..|  :|||:         :...::|.|...|             
  Rat   212 LISESPIKGRAQPYDPNFYDETY--DYGGF---------TMLFDDRRGRPVG------------- 252

  Fly   234 FNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPFINPWANGGGGDVDGFGNNAGGAGGFA 298
                   ....||||.||.....||.....  .:||...::| ..|......|    .||.||..
  Rat   253 -------FPMRGRGGFDRMPPGRGGRPMPP--SRRDYDDMSP-RRGPPPPPPG----RGGRGGSR 303

  Fly   299 GNSFGGGAGGPFGGGSFGNNGFGGGPSD-FGGNSGNFGQAQGTNSLPSLGSFSQNQGGTSSL--- 359
            ..:.......|..||........|.|.| :.|..|                ||.::...|::   
  Rat   304 ARNLPLPPPPPPRGGDLMAYDRRGWPGDRYDGMVG----------------FSADETWDSAIDTW 352

  Fly   360 -PSLGSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNAVGGANGGPNGSPNAATNVPQGH 423
             ||.......|.|..|.....:|| .|..|.|||                               
  Rat   353 SPSEWQMAYEPQGGSGYDYSYAGG-RGSYGDLGG------------------------------- 385

  Fly   424 DPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQY 488
             |..:|||||||:|||:||||||.||::||:||.|.|.|||||..|.|.||||:||..|||.|||
  Rat   386 -PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDWIITITGTQDQIQNAQY 449

  Fly   489 LLQQSVHE 496
            |||.||.:
  Rat   450 LLQNSVKQ 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 37/90 (41%)
PCBP_like_KH 103..167 CDD:239089 31/63 (49%)
LOC100359916XP_038966947.1 ROKNT 4..43 CDD:400419 8/24 (33%)
KH-I_HNRNPK_rpt1 42..105 CDD:411860 36/62 (58%)
KH-I_HNRNPK_rpt2 144..213 CDD:411861 32/69 (46%)
KH-I_HNRNPK_rpt3 387..460 CDD:411862 48/71 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340898
Domainoid 1 1.000 91 1.000 Domainoid score I7527
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 220 1.000 Inparanoid score I3473
OMA 1 1.010 - - QHG48676
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005459
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105766
Panther 1 1.100 - - LDO PTHR10288
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X348
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.900

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