DRSC/TRiP Functional Genomics Resources

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Protein Alignment nej and pbrm1

DIOPT Version :9

Sequence 1:NP_001188575.1 Gene:nej / 43856 FlyBaseID:FBgn0261617 Length:3282 Species:Drosophila melanogaster
Sequence 2:XP_009304062.1 Gene:pbrm1 / 565366 ZFINID:ZDB-GENE-080926-4 Length:1627 Species:Danio rerio


Alignment Length:1189 Identity:220/1189 - (18%)
Similarity:363/1189 - (30%) Gaps:470/1189 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly  1679 KTETKPLVPEP-----LAPNAGDKKKKCQFNPEELR--TALLPTLEKLYR----------QEPES 1726
            :.:.|.|.|.|     ::|..  |.:|...:|::.:  |.|...|.:||.          :...:
Zfish   588 REKRKELGPPPDDDEIVSPKL--KIRKSGISPKKSKYLTPLQQKLNELYEAVKNYTDKRGRRLST 650

  Fly  1727 VPFRYPVDPQALGIPDYFEIVKKPMDLGTIRTNIQNGKYSDPWEYVDDVWLMFDNAWLYNRKTSR 1791
            :..|.|...:   :|||:..:|||:|:..|::::...||.|....|:|:.|||:||..||...|.
Zfish   651 IFLRLPSRAE---LPDYYVAIKKPIDMEKIKSHMLANKYQDVDALVEDLVLMFNNACTYNEPESL 712

  Fly  1792 VYRYCTKLSEVF-----------EAEIDPV------------MQALGYCC--GRKYTFNPQVLCC 1831
            :|:....|.:|.           :|.:..|            :..||:..  ||          |
Zfish   713 IYKDALVLHKVLLETRRDLEGGDDAHVPDVARLIQELVRNLFVSVLGHQDDEGR----------C 767

  Fly  1832 YGKQLCTIP------------------------RDAKYYSYQNSLKEYGVASNR-YTYCQKCFND 1871
            |...|..||                        |..:...:|:.:.|....:.| :....:.|.|
Zfish   768 YSDSLAEIPAVDPNCSDKTPLNFEIIRANVDKGRYRRLDVFQDQMFEVLEKARRLHRTDSEIFED 832

  Fly  1872 ---IQGDTVTLGDD----------PLQSQT---------QIKKDQF-KEMKNDHLELEP------ 1907
               :|...:.:.|:          |..|.|         :.||::. ||.:.|.|:.|.      
Zfish   833 SVELQQFFIRIRDELCKNGEILLTPALSYTIKHLHSDVEKEKKEKLPKEYEEDKLKREEEKKEAE 897

  Fly  1908 -----------------------------------FVNCQECGRKQHQICV--LWLDSIWPGGFV 1935
                                               :|...|...:.|.:|:  ||.|.      .
Zfish   898 KSEDTAGGGWQGALQRNYSQDCSFKDNMYHVGDYVYVEPTEPNLQPHIVCIERLWQDD------A 956

  Fly  1936 CDNCLKKKNSKRKENKFNAKRLPTTKLGVYIETRV--NNFLKKKEAGAGEVHIRVVSSSDKCVEV 1998
            .:|.|......|....|:   |.|.|   ::|..|  :::..|         |.|.....|||.:
Zfish   957 GENWLYGCWFYRPNETFH---LATRK---FLEKEVFKSDYYNK---------IPVSKILGKCVVM 1006

  Fly  1999 KPGMRRRFVEQGEMMNEFPYRAKALFAFEEVDGIDVCFFGMHVQEYGSECPAPNTRRVYIAYLDS 2063
                   ||::...:....:|.:.:|..|              ..|.::..:....:::...|.|
Zfish  1007 -------FVKEYFKLQPDSFRPEDVFVCE--------------SRYSAKTKSFKKIKMWTMPLSS 1050

  Fly  2064 VHF---------------FRPRQ---------------------------------------YRT 2074
            |.|               |.|:|                                       |..
Zfish  1051 VKFVPREVPLPVVRVASMFAPKQESEKPPEVTEDDKALPSVIDKEKEDITLEVNNGEPGCQYYEQ 1115

  Fly  2075 AVYHEILLGYMD--YVKQLGYT------MAHIWACPPSEGDDYIF---HCHPTDQKIPKPKRLQE 2128
            ..|:.|.|...|  |::..|..      :..:|.   .:|..|.|   ..||.:.: .:|.::  
Zfish  1116 LCYNNIWLKVGDCVYIRSHGLVRNRVGRIEKMWV---RDGAAYFFGPIFIHPEETE-HEPTKM-- 1174

  Fly  2129 WYKKMLDKGMIER-----------IIQDYKDILKQAMEDKLGSAAELPYFEGDFWPNVLEESIKE 2182
            :|||.:....:|.           .:..:||.|.       ....|:|           ||.:..
Zfish  1175 FYKKEVFLSNLEESCPMTCIGGKCTVSSFKDFLS-------CRPTEMP-----------EEDVLL 1221

  Fly  2183 LDQEEEEKRKQAEAAEAAAAANLFSIEENEVSGDGKKKGQKKAKKSNKSKAAQRKNSKKSNEHQS 2247
            .:....|..||.:                      |.||.|:.                      
Zfish  1222 CESRYIESEKQMK----------------------KFKGLKRF---------------------- 1242

  Fly  2248 GNDLSTKIYATMEKHKEVFFVIRLHSAQSAASLAPIQDPDPLLTCDLMDGRDAFLTLARDKHFEF 2312
              .||.|:.     ..|:::..:|        :.|.::|.|||                :|..|.
Zfish  1243 --SLSAKVV-----EDEIYYFRKL--------IVPQKEPSPLL----------------EKKIEE 1276

  Fly  2313 SSLRRAQFSTLSMLYELHNQGQDKFVYTCNHCKTAVETRYHCTVCDDFDLCIVCKEKVGHQHKME 2377
            ...:.|..:.    .||.:.|.|....:..||...::|:    :..|.|:.              
Zfish  1277 LEAKFADMTD----EELDDLGDDDGDGSDAHCMPQLQTQ----LSGDMDML-------------- 1319

  Fly  2378 KLGFDIDDGSALADHKQANPQEARKQSIQRCIQSLAH---ACQCRDANCRLPSCQKMKLVV--QH 2437
                                ..|.:||:.:.|:.|:.   |.:..:.:..:....:|:.|:  ||
Zfish  1320 --------------------HYAPQQSVPKSIKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQH 1364

  Fly  2438 TKNCKRKPNGGCPICKQLIALCCYHAKNCEEQKCPVPFCPNIKHKLKQQQSQQKFQQQQLLRRRV 2502
                   |:.......:|:..   ..:|.|..|           |.:.::...|..:||...|..
Zfish  1365 -------PDFSFGELSRLVGT---EWRNLEATK-----------KAEYEERAAKVAEQQERDRAH 1408

  Fly  2503 ALMSRTAAPAA-LQGPAAVSGPTVVSGGVPVVGMSGVAVSQQVIPGQAGILPPGAGGMSPSTVAV 2566
            ....|...||. |.|...:..|   .|.||:.||.|     ...|.......||...|.|..:.:
Zfish  1409 QGSPRAGTPAGLLMGVVPLPTP---MGLVPMAGMLG-----SFRPPMFTCQGPGMINMPPHPMGL 1465

  Fly  2567 PS-PVSGGAGAGGM--GGMTSPHPHQPG--IGMKPGGGHS------PSPNVLQVVKQVQEEAARQ 2620
            |: |::...|..||  .||....|...|  .|.:.||.:|      |.|...||     .:.|.|
Zfish  1466 PALPLNFPWGLPGMPFHGMNGMAPGSTGSAYGTQMGGMNSGQQVPPPYPGQGQV-----GQPAHQ 1525

  Fly  2621 QVSHGGGFGKGVPM--APP 2637
            |.|        .||  |||
Zfish  1526 QPS--------TPMFVAPP 1536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nejNP_001188575.1 ZnF_TAZ 530..600 CDD:214717
KIX 946..1024 CDD:280354
Bromo_cbp_like 1705..1812 CDD:99927 34/141 (24%)
RING_CBP-p300 1824..1906 CDD:276805 22/129 (17%)
PHD_CBP_p300 1908..1939 CDD:277032 7/32 (22%)
HAT_KAT11 1970..2283 CDD:285432 57/390 (15%)
ZZ_CBP 2339..2379 CDD:239077 5/39 (13%)
ZnF_TAZ 2404..2476 CDD:214717 13/76 (17%)
pbrm1XP_009304062.1 Bromo_polybromo_I 45..156 CDD:99954
Bromo_polybromo_II 183..284 CDD:99948
Bromo_polybromo_III 352..453 CDD:99951
Bromo_polybromo_IV 488..591 CDD:99949 0/2 (0%)
Bromo_polybromo_V 626..730 CDD:99946 30/106 (28%)
Bromo_polybromo_VI 745..850 CDD:99956 17/114 (15%)
BAH_polybromo 923..1042 CDD:240068 28/160 (18%)
BAH_polybromo 1120..1238 CDD:240068 27/163 (17%)
HMG 1341..1408 CDD:197700 14/87 (16%)
Forkhead_N 1415..1541 CDD:254796 42/143 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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