DRSC/TRiP Functional Genomics Resources

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Protein Alignment a and Pdzd11

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_001343313.1 Gene:Pdzd11 / 72621 MGIID:1919871 Length:140 Species:Mus musculus


Alignment Length:121 Identity:36/121 - (29%)
Similarity:56/121 - (46%) Gaps:22/121 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1189 PPAAALMHHRPSLPVAKLTIRDEEMAEVIRASMSEGSGRCTPKTITFFKGPGLKSLGFSIVGGRD 1253
            |||....|.|...|     ..:.|:.:.:            |:.:|..|.||.: |||:|.||:.
Mouse    21 PPAWIPPHERVYHP-----DYNNELTQFL------------PRIVTLKKPPGAQ-LGFNIRGGKA 67

  Fly  1254 SPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAETIGLFKNVRE 1309
            |   .:|||:..|.|...|...| ||.||:::.:|....|.:.|::.:.:.|..||
Mouse    68 S---QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTARE 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492
PDZ_signaling 1230..1317 CDD:238492 29/80 (36%)
Pdzd11NP_001343313.1 PDZ_signaling 45..125 CDD:238492 29/80 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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