DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and Grip

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster


Alignment Length:1138 Identity:215/1138 - (18%)
Similarity:343/1138 - (30%) Gaps:434/1138 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 SASPTGGHQNSSGSTTSTLKKCKSGPIETIKQRHQQQQQQQQSVQD------------------- 431
            |..|.||              |..|....:||..||||||||...:                   
  Fly     6 SKKPIGG--------------CVPGKSAALKQDQQQQQQQQQESHNNSFNGHHHPPTDTALAPML 56

  Fly   432 -----VGTGQSQSAQSTPTH--QFQAAARPQKALK---NFFHR---------------------- 464
                 :...||:.:...|..  .:.....|:.||.   .|..|                      
  Fly    57 SVDRAMSPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERNDLSYPPVVGSLNPVGHAADFL 121

  Fly   465 -----------IGSTGMLNHRSHNLLKASEAAQQATPAATTLYRSSSTSQLSSSSY--------- 509
                       |.:.|:.|.:..|:|.|  ....|.||...:..|.....:|.:|.         
  Fly   122 APGDRLHQIDGISTIGLSNQKVMNMLCA--GGSDACPAIVEIEYSLPECTVSQNSLCVTSKLAQI 184

  Fly   510 -VKCDDPTEGLNLQ----------------------REQREQRLPRI--ASLKSSSCDDIAKVSS 549
             |:.:....||.|:                      |.:...||.|:  .||...:..:..::..
  Fly   185 TVERESGCLGLTLRGGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIK 249

  Fly   550 CLTASTSSGSAAG------------------SLG---------------------SPPSSAAAGG 575
            |      .|..:|                  |:|                     :....|:..|
  Fly   250 C------GGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSG 308

  Fly   576 GGTANSGQHDPSRRGAFPYAFLRSRLS-----------VL-------------PEE-----NHGN 611
            ..|.:||:......|.|..:.|.:.::           ||             |:|     :...
  Fly   309 SSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTST 373

  Fly   612 VPGHLKQQIQRQREQHQQHQRDLLQQEQTSSPLPQRRSPEQAMLNNVSRNDSITSKDWEPLYQRL 676
            ..|:.:.||.......::....|             .||:.:.....||..|...:..:...::.
  Fly   374 GRGYTQMQIMPAHALARRGHTTL-------------GSPKYSFSTLESRKSSTAGRQRQRFARKS 425

  Fly   677 SSCLSSNESGYDSDGGATGARLGNNLSISGGDTESIASGTLKRNSLISLSSSEGVGMGMGMSLGL 741
            |..|.:...|   ..|:||..:|     :||                 :..|..:|||:|     
  Fly   426 SLPLENPACG---TPGSTGGSMG-----TGG-----------------IHGSSSLGMGLG----- 460

  Fly   742 GAPSTRNSSICSA---PVSLGGYNYDYETETIRRRFRQVKLERKCQEDYIGIVLSPKTVMTNSNE 803
                     :|.|   ||.|                       .|... .||:|| :||..:...
  Fly   461 ---------LCRAESFPVLL-----------------------DCSHG-AGIILS-ETVSGSGGS 491

  Fly   804 QQYRYLIVELEPYGMAQKDGRLRLGDEIVNVNGKHLRGIQSFAEVQRLL----------SSFVDN 858
            .  ...|.::.|..:|.:.|.::.||.||.:|..:   ....|.:::||          :....|
  Fly   492 G--AVAIAQIVPDSVADRSGCIQAGDRIVAINKMY---SLDAAAMRQLLEGGSSRNGASNGTPAN 551

  Fly   859 CIDLVIAHDEVTTVTD----FYTK----------IRIDGMSTQRHRLSYVQRTQSTDSLSSMQS- 908
            .::|.|..|....|..    |..|          :.:.|.|.....:|.|:.........|::| 
  Fly   552 WLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSG 616

  Fly   909 ---LQLQQERIQGHNTEQEQEAQGEDQCDARSMASVST-------MPTPMPLMQHRRSSTPRHSL 963
               |.:.|..:|..|.:...:.:|..|..:.|.:..:|       :|..:|:.....|:.|...:
  Fly   617 DILLAVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGI 681

  Fly   964 DVGAPEHELLRRRARSSSGQRSLALTPTPLFASGSSSCSSSPNHRLLDNENDPANDTDSYTPVYA 1028
            ::|.                              ....|:|.:|             |.|:..|.
  Fly   682 NLGM------------------------------GMGVSTSTDH-------------DLYSSAYV 703

  Fly  1029 NRAASVCVASSLADDEKWQLLARKRCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSLRFA 1093
                   .|...||           |.  |..|.||.|..|           .:.:....||:..
  Fly   704 -------TAGKYAD-----------CV--SLKSRTPQPDYF-----------RVPSMDDASLQSV 737

  Fly  1094 HSRLSSSRLSLFMQAPPNSLTVGEGVAN--TPSSTATTTTDLTNQQQQQQNQQQTHQSLYIKHSP 1156
            ..| |.|..:...|| .||.:.|....:  .|.:|.:.||:|. :::.:|.|......|....|.
  Fly   738 QLR-SGSGSNGGNQA-ANSWSTGVNSRSYVAPPNTQSLTTELP-EEEDEQEQMYPGYELNRYASV 799

  Fly  1157 KSVSLFSPNPYVNASSSPASASTSAGAGSSLAPPAAALMHHRPSLPVAKLTIRDEEMAEVIRASM 1221
            ...:|  |.|..|.....|::|:|..:||||         |:....|                  
  Fly   800 DCTAL--PPPMENKVYGSAASSSSKSSGSSL---------HQIIFTV------------------ 835

  Fly  1222 SEGSGRCTPKTITFFKGPGLKSLGFSIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVE 1286
                 |..||       .||  ||.::.|..|..|   .|.:..:...|.|..:|.:..||:::.
  Fly   836 -----RLEPK-------GGL--LGITLAGSEDITK---SITISGLVEGGIAHKNGQIHVGDQLLA 883

  Fly  1287 INGNSVQGMSHAETIGLFKNVREGTIV-LKILR 1318
            |:.:|||||..:....|.:|:  |.:| |||||
  Fly   884 IDEHSVQGMPLSHATSLLQNL--GDLVDLKILR 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 21/99 (21%)
PDZ_signaling 1230..1317 CDD:238492 27/87 (31%)
GripNP_572285.2 PDZ 82..147 CDD:294084 9/64 (14%)
PDZ_signaling 183..254 CDD:238492 12/76 (16%)
PDZ_signaling 278..375 CDD:238492 12/96 (13%)
PDZ 496..>521 CDD:294084 8/24 (33%)
PDZ_signaling 571..658 CDD:238492 16/86 (19%)
PDZ_signaling 832..913 CDD:238492 29/117 (25%)
PDZ_signaling 973..1055 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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