DRSC/TRiP Functional Genomics Resources

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Protein Alignment a and Mhcl

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster


Alignment Length:1009 Identity:192/1009 - (19%)
Similarity:317/1009 - (31%) Gaps:333/1009 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 LQQQQQQHLQHQQQQQPLRTATPTCLLSGRQTPSAISVMSLQEATSLHRQQQQPHQPPTIYVPVP 179
            |:|:...:|.|.:       |.||.|:.....|  :|:.| ::..|:.|..:....||.:|....
  Fly   581 LRQRYASNLIHTK-------AGPTLLVVNPMAP--LSLYS-EKVVSMFRGCKTEDMPPHVYSLAQ 635

  Fly   180 TKLGNNVNTGNSSATLLLSYGSTSSIANLQQQQQQHAAQYQQYVAQRLHAASSSCLYEKGSNASG 244
            |...:.|.|....:.:.:                                         |.:.||
  Fly   636 TAYRSLVETRRDQSLIFM-----------------------------------------GRSGSG 659

  Fly   245 GASSNKSSLSLTPNGHLPDYKLVTAMPVVVLDDEHKSNSL-PATEASRNSNSSSNMNGSSNSN-- 306
            .::|.|         |..:|..:.|.......:..|.|:| ...||..|:.:..|.|.:..:.  
  Fly   660 KSTSFK---------HALNYLALAAGAYNNFINAEKVNALCTILEAFGNTKTCLNSNATRMTQLL 715

  Fly   307 SLDVSNSNSHSGSSTSLASTTRNVFTWGKRMSRKLDLLKRSDSPAAAHKSHSDLRSLFHSPTHHK 371
            |||...:...:.:|..:....|      :|..|:|           .|: ||     ||..|...
  Fly   716 SLDFDQTGQIASASLQVLLPER------QRAGRRL-----------GHE-HS-----FHIMTRLL 757

  Fly   372 SGSGGSSGPSSAKASASPTGGHQNSSGSTTSTLKKCKSGPIETIKQRHQQQQQQQQSVQ------ 430
            :|:.|.........:.:....|...|.|             :.::.||:......::||      
  Fly   758 AGAAGLLQKELHLENITSEDSHPFISLS-------------QKLEDRHRAANDFMRTVQAFETLN 809

  Fly   431 -------------------------DVGTGQSQSAQSTPTHQFQAAARPQKALKNFFHRIGSTGM 470
                                     .:|||      ||...||   |.|..|.|       ::|:
  Fly   810 IDAKAVRGIWSILAAIYHLGIAGVTKLGTG------STARTQF---ANPTAARK-------ASGL 858

  Fly   471 LNHRSHNLLKASEAAQQATPAATTLYRSSSTSQLSSSSYVKCDDPTEGLNLQREQREQRLPRIAS 535
            |.....:|..|:....|  |.|.....|.|.|..|.:.:....:..|.|.:.. ..|.....:|.
  Fly   859 LGVNLEDLSSAAFGLTQ--PNAPNGGLSPSKSPTSDTGHEWAWECLEALVIGL-YSEALAAVVAL 920

  Fly   536 LKSSSCDDIAKVSSCLTASTSSGSAAGSLGSPPSSAAAGGGGTANSGQHDPSRRGAFPYAFLRSR 600
            :....|.....::|.:...|..       ...|:|.....|.|....:|:          :|:.|
  Fly   921 INRQICTSSHTIASIMLIDTPG-------FQNPASCGQQVGATLADLRHN----------YLQER 968

  Fly   601 LSVL--------PEENHGNV-------------PGHLKQQIQRQREQH--QQHQRDLLQQEQTSS 642
            |.:|        |.:.:...             ||.|...|.:..:.|  :..||||.:.:    
  Fly   969 LQMLFHHTTLVAPRDRYAQELVEIEMDLASECHPGPLISLIDKAPQNHVVRSSQRDLREHD---- 1029

  Fly   643 PLPQRRS-----PEQAMLNNVSRNDSITSKDWEPLYQR-----LSSCL-----------SSNESG 686
                ||.     .|:|:..| |.:|:...:.:.....|     |..|.           .:|...
  Fly  1030 ----RRGMLWLLDEEAIYPN-SNDDTFLERLFSHYGDREHHSLLRKCAGPRQFVLHHLQGTNPVL 1089

  Fly   687 YDSDGGATGAR----LGNNLSISGGDTESIASGTLKRNSLISLSSSEGVGMGMGMSLGL-GAPST 746
            |..||....:|    :.|.:|:    .:..:...:.|..:.||:...|..:..|...|| |..|.
  Fly  1090 YAVDGWVRHSREHPGIRNAVSL----LQDSSREEINRLYIGSLTRGSGAMVFCGSFAGLEGTQSL 1150

  Fly   747 RNSSICSAPVSLGGYNYDYETETIRRRF-------RQVKLERKCQEDYIGIVLSPKTVMTN---- 800
            |..|                  :|||.|       ..:.|:.|...|  ||:.:.:...|:    
  Fly  1151 RRVS------------------SIRRSFTTAGVKRNSIMLQVKFTVD--GIIDTLRRTGTHFVHC 1195

  Fly   801 ----SNEQQYRYLIVELEPYGMAQKDGRLRLGDEIVNVN--GKHLRGIQ--SFAEVQRL------ 851
                .|..::........|...|   |::...:|:|||.  ...|||.|  ..|.:.||      
  Fly  1196 YLLQHNAGKHTKYTANGSPSSAA---GQVSSEEEMVNVPLLRSQLRGSQVLEAARLHRLGFPESV 1257

  Fly   852 ---------------LSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRHRLSYVQRTQS-T 900
                           |:|..|..::.::|.:|:...:     .|| |.|....|...:...:: .
  Fly  1258 PLLEFVRRFGLLAGDLASNKDVSVEQILAVNELDVAS-----YRI-GPSQILFRSGVLSELEAKR 1316

  Fly   901 DSLSSMQSLQLQ-------------QERIQGHNTEQEQEAQGEDQCDARSMASVSTMP------- 945
            |.|.|.:.:|||             |.|:|       :.|....|.:.::..:|...|       
  Fly  1317 DVLLSDRIIQLQAFCRGYLARKKMSQRRVQ-------ELAVRCIQRNVKAFLAVRDWPWWRLLVR 1374

  Fly   946 -TPMPLMQHRRSSTPRHSLDVGAPEHELLRRRAR 978
             ||: |..||...      .:.....|||..||:
  Fly  1375 VTPL-LNVHRTEE------QLKTANEELLMLRAK 1401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 24/122 (20%)
PDZ_signaling 1230..1317 CDD:238492
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492
MYSc 556..1317 CDD:214580 169/909 (19%)
MYSc_Myo18 575..1305 CDD:276837 168/897 (19%)
GBP_C <1540..1750 CDD:303769
COG1340 1565..1833 CDD:224259
coiled coil 1723..1734 CDD:293879
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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