DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and GRID2IP

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_001138590.1 Gene:GRID2IP / 392862 HGNCID:18464 Length:1211 Species:Homo sapiens


Alignment Length:437 Identity:96/437 - (21%)
Similarity:149/437 - (34%) Gaps:150/437 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   817 GMAQKDGRLRLGDEIVNVNGKHLRGIQSFAEVQRLLSSFVDNCIDLVIAHDEVTTVTD----FYT 877
            |....:..|:.||.|:.:||..:|                 ||     :||:|.::..    ..|
Human   307 GSPADNAALKSGDRILFLNGLDMR-----------------NC-----SHDKVVSMLQGSGAMPT 349

  Fly   878 KIRIDGMSTQRHRLSYVQRTQSTDS---LSSMQSLQLQQE------RIQGHNTEQEQE---AQGE 930
            .:..:|:      :.:...:.|.||   .|::.|||...|      |:||....|:.|   ...|
Human   350 LVVEEGL------VPFASDSDSLDSPNPSSALTSLQWVAEILPSSIRVQGRTFSQQLEHLLTPPE 408

  Fly   931 DQCDARSMASVSTMPTPMPLMQHRRSST------PRHSLDVGA--------------PEHELLRR 975
            .....|::.|         ..|||...|      |  .||..|              .|.||.:.
Human   409 RYGVCRALES---------FFQHRNIDTLIVDVYP--VLDTPAKQVLWQFIYQLLTYEEQELCQE 462

  Fly   976 RARSSSGQRSLALTPTPLFASGSSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVAS-- 1038
            :.....|..::...|.|                .||.|::|   |....|..:.||:|:|..|  
Human   463 KIACFLGYTAMTAEPEP----------------ELDLESEP---TPEPQPRSSLRASSMCRRSLR 508

  Fly  1039 ------------SLADDEKWQLL-ARKRCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSL 1090
                        |...:....|: ..::..:|::|..||||:              :.::.|..|
Human   509 SQGLEAGLSCGPSECPEMPLPLIPGERQAGDGTSLPETPNPK--------------MMSAVYAEL 559

  Fly  1091 RFAHSRLSSS---RLSLFMQAPPNSLTVGEGVANTPS-STATTTTDLTNQQQQQQNQQQTHQSLY 1151
               .|||:||   ::.          ||.:..|:.|. |.|.||...|.......:::......|
Human   560 ---ESRLNSSFKGKMG----------TVSKSRASPPGPSPAVTTGPRTLSGVSWPSERLLPSPCY 611

  Fly  1152 IKHSPKSVSLFSP-----NPYVNASSSPASASTSAGAGSSL--APPA 1191
              |...|..|.||     :||.:..||.| .|...|.|...  :||:
Human   612 --HPLCSGGLASPSSSESHPYASLDSSRA-PSPQPGPGPICPDSPPS 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 10/47 (21%)
PDZ_signaling 1230..1317 CDD:238492
GRID2IPNP_001138590.1 PDZ_signaling 14..74 CDD:238492
HN_L-delphilin-R1_like 133..212 CDD:259820
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 226..269
PDZ_signaling 278..353 CDD:238492 14/67 (21%)
HN_L-delphilin-R2_like 389..468 CDD:259821 19/89 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 478..502 9/42 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 525..549 5/23 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 568..600 9/41 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 618..672 13/39 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 718..783
FH2 820..1188 CDD:280362
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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