DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and pdzk1

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_001122142.2 Gene:pdzk1 / 337325 ZFINID:ZDB-GENE-031222-1 Length:553 Species:Danio rerio


Alignment Length:606 Identity:125/606 - (20%)
Similarity:202/606 - (33%) Gaps:199/606 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   794 PKTV-MTNSNEQQYR-YLIVE----------LEPYGMAQKDGRLRLGDEIVNVNGKHLRGIQSFA 846
            |:.: :|....|.|. ||.||          ||..|.|:..| |:.||.|:.||           
Zfish     6 PRIISLTKRESQGYGFYLRVEHGEEGHLIRALEMGGAAELAG-LKDGDRILRVN----------- 58

  Fly   847 EVQRLLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRHRL---SYVQRTQSTDSLSSMQS 908
                  ::||||.        |.|.|.|.   :|..|||...|.|   :|.....:..:|:.:||
Zfish    59 ------NTFVDNL--------EHTQVADL---VRNSGMSVTLHVLGEEAYKTAKANNVNLADLQS 106

  Fly   909 LQLQQERIQGHNTEQEQEAQGEDQCDARSMASVSTMPTPMPLMQHRRSSTP-RHSLDVGAPEHEL 972
            |                  .|:.|   .:|..|||......|...::||:. ..||         
Zfish   107 L------------------PGQSQ---PTMNGVSTPAAKAKLCYLQKSSSGFGFSL--------- 141

  Fly   973 LRRRARSSSGQRSLALTPTPLFASG--SSSCSSSPNHRLLDNENDPANDTDSYTPVYANRAASVC 1035
                 :|:.|...:.:...   .||  :.........||::..::..........|...:|||..
Zfish   142 -----KSTKGAHGIFMVDV---VSGGVADQAGVKLGDRLVEINSENVEHLVHDQIVQKVKAASDR 198

  Fly  1036 VASSLADDEKWQLLARKRCSEG---SALSATPNPQQFGQRTHYARNSINLANSHYRSLRFAHSRL 1097
            :...|.|:|..:....|....|   :.:...|:..:..       :.|..|:.:...|:....| 
Zfish   199 LMLLLVDEEADRYFKSKNIQPGVSHATVKHLPHKPRIA-------DMIKRADGYGFMLKEDPKR- 255

  Fly  1098 SSSRLSLFMQAPPNSLTVGE----------GVANTPSSTATTTTDLTNQQQQQQNQQ-------- 1144
                         ....:||          |:.:.....|....|:.|.:.:|..::        
Zfish   256 -------------KGHCIGEIDKGSPAERAGMKDMDRLAAVNGEDIENCKHEQVVEKICQGNKCC 307

  Fly  1145 ------QTHQ---------SLYIKHSPKSVSLFSPN------------PYVNASSSPASASTSAG 1182
                  :|.:         .||.:....|:..:..|            |....:::||.|:|.|.
Zfish   308 LLVLDAETDKIYKLGGVSPLLYWEEMRGSLPGYPDNEAVAIPAVAAAVPAAVVAATPAPAATPAP 372

  Fly  1183 AGSSLAPPAAAL---MHHRPSLPVAKLTIRDEEMAEVIRASMSEGSGRCTPKTITFFKGPGLKSL 1244
            |.:....||||.   :.|:|.|            ..:.|.|                     ...
Zfish   373 AATPTPVPAAAEPADVDHKPKL------------CRLERTS---------------------AGF 404

  Fly  1245 GFSIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAETIGLFKNVRE 1309
            ||.:.|.:..|..::...||     |.|||...|...|.:||::|.:|:..:|.|.:.|.:|..:
Zfish   405 GFHLNGIQGVPGQHIQEVVK-----GGAADRAGLVDDDVVVEVDGVNVEMSTHEEVVNLIRNSGD 464

  Fly  1310 GTIVLKILRRKLQ---KAKSM 1327
             |:||.:..||..   |||.:
Zfish   465 -TLVLLVADRKAYEHLKAKGI 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 23/82 (28%)
PDZ_signaling 1230..1317 CDD:238492 23/86 (27%)
pdzk1NP_001122142.2 PDZ_signaling 6..86 CDD:238492 32/108 (30%)
PDZ_signaling 126..204 CDD:238492 15/94 (16%)
PDZ 232..311 CDD:214570 11/99 (11%)
PDZ_signaling 392..471 CDD:238492 27/117 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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