DRSC/TRiP Functional Genomics Resources

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Protein Alignment a and synj2bp

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_956211.1 Gene:synj2bp / 334599 ZFINID:ZDB-GENE-030131-6531 Length:152 Species:Danio rerio


Alignment Length:88 Identity:34/88 - (38%)
Similarity:47/88 - (53%) Gaps:2/88 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly  1224 GSGRCTPKTITFFKGPGLKSLGFSIVGGRDSP--KGNMGIFVKTVFPSGQAADDGTLQAGDEIVE 1286
            ||....|..:.|....|...|||:||||.|..  ..:.||:|..:..:|.||.||.||.||:|:.
Zfish     3 GSAHSAPSDVEFTLKRGPAGLGFNIVGGVDQQYMMNDSGIYVAKIKENGAAALDGRLQEGDKILA 67

  Fly  1287 INGNSVQGMSHAETIGLFKNVRE 1309
            |||..:..:||...:.||::..|
Zfish    68 INGRKLDNLSHGAAVELFRSAGE 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492
PDZ_signaling 1230..1317 CDD:238492 32/82 (39%)
synj2bpNP_956211.1 PDZ_signaling 17..97 CDD:238492 30/74 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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