DRSC/TRiP Functional Genomics Resources

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Protein Alignment a and CG5921

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_727061.2 Gene:CG5921 / 31538 FlyBaseID:FBgn0029835 Length:886 Species:Drosophila melanogaster


Alignment Length:720 Identity:154/720 - (21%)
Similarity:236/720 - (32%) Gaps:225/720 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 VPTKLGNNVNTGNSSATLLLSYGSTSSIANLQQQQQQHAAQYQQYVAQRLH--AASSSCLYEKGS 240
            |.|..|.::..|.||     .|.|::|.....|......|:.::..|.|..  |....|    |.
  Fly   275 VRTAAGCDLFPGESS-----GYNSSASSVTGDQSPCWADAKSKRLTAVREESGAGGGGC----GL 330

  Fly   241 NASGGASS-------------NKSSLSLTPNGHLPDYKLVTAMPVVVLDDEHKSNSLPATEASRN 292
            :::.||.|             ||:.:.||.||        |::         .:..:.:|..|..
  Fly   331 SSAPGAGSPNWSQGVEVHKQMNKTIIKLTENG--------TSI---------NNTYIASTGGSSV 378

  Fly   293 SNSSSNMNGSSNSNSLDVSNSNSHSGSSTSLASTTRNVFTWGKRMSRKLDLLKRSD-SPAAAHKS 356
            |.|.|..:|:|..:....||.::.|.:||:                     :|||. .|..:..|
  Fly   379 SGSGSTGSGTSGRSQQSQSNPSNPSRNSTT---------------------MKRSHLRPVNSAGS 422

  Fly   357 HSDLRSLFHSPTHHKSGSGGSSGPSSAKASASPTGG---------------HQNSSGSTTSTLKK 406
            ...|          .|||.||:|.:.:..|.|.:||               ..|:|||..|:|..
  Fly   423 GIGL----------SSGSAGSAGSAGSSGSGSRSGGVIAPAPAPPPPAMNEGANASGSVGSSLSS 477

  Fly   407 CKSGPIETIKQRHQQQQQQQQSVQDVG-TGQSQSAQSTPTHQFQAAARPQKALKNFFHRIGSTGM 470
            ..:..::..|::.||||.||:..:|.. .|.....:....|.           .|..|| .|.|.
  Fly   478 AITEELKKRKEKQQQQQHQQRHNRDRDRDGNGNVDRQLTGHN-----------GNGGHR-SSVGQ 530

  Fly   471 LNHRSHNLLKASEAAQQATPAATTLYRSSSTSQLSSSSYVKCDDPTEGLNLQREQREQRLPRIAS 535
            ::||        :.|..|..|||                           ||..:|...|     
  Fly   531 VSHR--------QRANVAGVAAT---------------------------LQGSERISNL----- 555

  Fly   536 LKSSSCDDIAKVSSCLTASTSSGSAAGSLGSPPSSAAAGGGGTANSGQHDPSRRG---AFPYAFL 597
                               |..|.|.|:.|   |:.|||.||..::...|..:|.   .|...|.
  Fly   556 -------------------TGGGGAGGAGG---SNGAAGAGGDQHTALMDEFKRAHQRMFRNGFH 598

  Fly   598 RS--------------------RLSVLPEENHGNVPGHLKQQIQRQREQHQQHQRDLLQQEQTSS 642
            .|                    .:|:|..:|.|:..|.....:...|..........:...|...
  Fly   599 ESEHKLSSLGKSSLADRSLYGREMSLLRVKNGGSGGGEGSGVMPTMRPVSMGRPLVTMSTYQERG 663

  Fly   643 PLPQRRS--PEQAMLNNVSRNDSITSKDWEPLYQRLSSCLSSNESGYDSDGGATGARLGNNLSIS 705
            ...:|.|  |:::...|     ||.|.:.....:..|:..::|.:...|..|...|. ||.....
  Fly   664 ETLKRTSIMPDESCYRN-----SINSNNNNGFSRNRSNSNTNNNNRLQSQNGVNPAN-GNGSPEL 722

  Fly   706 GGDTESIASGTLKR--NSLISLSSSEGVGMGMGMSLGLGAPSTRN-----SSICSAPVSLGGY-- 761
            .......|:...|:  ...|...:......|.|.:.|||..|...     |.:.||.:|:||:  
  Fly   723 PPPPPQFANPQPKQMPPQHIKPMTGNAAANGSGSANGLGNGSLAKVRQPMSPMRSASISVGGFRP 787

  Fly   762 ----NYDYETETIRRRFRQVKLERKCQEDYIGIVLSPKTVMTNSNEQQYRYL---IVELEPYGMA 819
                ..||:...||        ..:..|.     :|.:.|.|  ::||.|.|   .|.:..||..
  Fly   788 PATPQPDYDAVQIR--------SSQGSES-----VSGRDVAT--SQQQRRTLRLGTVTIGEYGDQ 837

  Fly   820 QKDGR 824
            :..|:
  Fly   838 RTTGK 842

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 12/53 (23%)
PDZ_signaling 1230..1317 CDD:238492
CG5921NP_727061.2 PDZ_signaling 82..152 CDD:238492