DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and Grid2ip

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_001152793.1 Gene:Grid2ip / 170935 MGIID:2176213 Length:1203 Species:Mus musculus


Alignment Length:793 Identity:158/793 - (19%)
Similarity:246/793 - (31%) Gaps:311/793 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   517 EGLNLQREQREQRLPRIASLKSSSCDDIAKVSSCLTASTSSGSAAGSLGSPPSSAAAG------- 574
            |||.:....|| |:.|:|             ..|.....|.|...|..|.|.:..||.       
Mouse    48 EGLAVGGLSRE-RIVRLA-------------RRCPRVPPSLGVLPGPEGGPTALTAAWLTRRFGR 98

  Fly   575 -----------GGGTANSGQHDPSRRGAFPYA-----FLRSRLS--------------------- 602
                       .||......|...||.|..::     .|..||:                     
Mouse    99 SLPLSRELLRLAGGPRPDAVHRERRRKAQEFSCQVDDILGDRLTAKEQVFTALKQFAAEQRVDEL 163

  Fly   603 ------VLPEENHGNVPGHLKQQIQRQREQHQQHQRDLLQQ-----------EQTSSPLPQRRS- 649
                  |||.|..|.|..:|:..|.:   :|:....:::.|           .|.:..|.:.|| 
Mouse   164 VWTLTLVLPSEAQGPVLDNLRIFIPK---KHRARFDEVVSQGLLGKLCRARRAQGAQRLRRSRSE 225

  Fly   650 --PEQAMLNNVSRNDSITSKDWEPLYQRLSSCLSSNESGYDSDGGATG-------ARL--GNNLS 703
              ||:.:::  :|..:...:..||..::.:|.|          ||.||       .|:  ||.  
Mouse   226 ERPERLLVS--TRASAAPRRPDEPPPRKATSLL----------GGRTGPGGPRRTVRVYKGNK-- 276

  Fly   704 ISGGDT---------ESIASGTLKRNSLISLSSSEGV----GMGM---------GMSLGLGAPST 746
             |.|.|         ||:..|:...|:  ||.|.:.:    |:.|         .|..|.||..|
Mouse   277 -SFGFTLRGHGPVWIESVLPGSPAENA--SLKSGDRILFLNGLDMRNCSHDKVVSMLQGSGAMPT 338

  Fly   747 RNSSICSAPVSLGGYNYDYETETIRRRFRQVKLERKCQEDYIGIVLSPKTVMTNSN--EQQYRYL 809
              ..:...||.....:...::.|  |......|:      ::..:| |.::.....  .||..:|
Mouse   339 --LVVEEGPVPFASDSDSLDSPT--RASALTSLQ------WVADIL-PSSIRVQGRTFSQQLDHL 392

  Fly   810 IVELEPYGMAQKDGRLRLGDEIVNVNGKHLRGIQSFAEVQRLLSSFVDNCIDLVIAHDEVTTVTD 874
            :...|.||:.                    |.::.|         |....||        |.:.|
Mouse   393 LTPPERYGVC--------------------RALERF---------FQHRNID--------TLIVD 420

  Fly   875 FYTKIRIDGMSTQRHRLSYVQRTQSTDSLSSMQSLQLQQERIQ---GHNTEQEQEAQGEDQCDAR 936
            .|..     :.|...::.:    |....|.:.:..:|.||:|.   |:....|.|:..:.:.:: 
Mouse   421 VYPV-----LDTPAKQVLW----QFLYQLLTYEEQELCQEKIACFLGYTAMTEPESSLDLEPES- 475

  Fly   937 SMASVSTMPTPMPLMQHRRSSTPRHSLDVGAPEHELLRRRARSSSGQRSLALTPTPLFASGSSSC 1001
                 :..|||.|        .||.||...:    :.||..||...:.||        :.|...|
Mouse   476 -----TPEPTPEP--------QPRSSLRASS----MCRRSLRSQGLETSL--------SCGPGDC 515

  Fly  1002 SSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASSLADDEKWQLLARKRCSEGSALSATPNP 1066
            ...|                  .|:                     :...::..:|::|..||||
Mouse   516 PEMP------------------LPL---------------------IPGERQAGDGTSLPETPNP 541

  Fly  1067 QQFGQRTHYARNSINLANSHYRSLRFAHSRLSSS------RLSLFMQAPPNSLTVGEGVANTPSS 1125
            :              :.::.|..|   .|||:||      .:|....:||....||.....|.|.
Mouse   542 K--------------MMSAVYAEL---ESRLNSSFKGKIGTMSKSRASPPVPSLVGTSGPRTLSG 589

  Fly  1126 TATTTTDLTNQQQQQQNQQQTHQSLYIKHSP-----KSVSLFSP-----NPYVNASSSPASASTS 1180
            .:..:..|.                   .||     .|..|.||     :||.:..||.| .|..
Mouse   590 VSWPSDRLL-------------------PSPCYDPLCSGGLASPSSSESHPYASLDSSRA-PSPQ 634

  Fly  1181 AGAGSSLA--PPA 1191
            .|.||..|  ||:
Mouse   635 PGLGSIHADSPPS 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 14/91 (15%)
PDZ_signaling 1230..1317 CDD:238492
Grid2ipNP_001152793.1 PDZ_signaling 9..69 CDD:238492 9/34 (26%)
HN_L-delphilin-R1_like 122..201 CDD:259820 15/81 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 215..270 14/66 (21%)
PDZ_signaling 269..342 CDD:238492 20/79 (25%)
HN_L-delphilin-R2_like 378..457 CDD:259821 21/124 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 466..541 23/139 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 563..586 5/22 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 611..656 15/38 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 710..821
FH2 812..1180 CDD:280362
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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