DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and FRMPD2

DIOPT Version :10

Sequence 1:NP_524641.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:XP_054220869.1 Gene:FRMPD2 / 143162 HGNCID:28572 Length:1395 Species:Homo sapiens


Alignment Length:935 Identity:175/935 - (18%)
Similarity:319/935 - (34%) Gaps:296/935 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   616 LKQQIQRQREQHQQHQRDLLQQ--EQTSSPLPQRRSPEQAMLNNVSRNDSITSKDWEPLYQRL-- 676
            :::::..:....||::..||::  ..|||..|..::||......||...:.|....||.:..|  
Human   190 VEKRVVEESSSVQQNRSYLLRKRLRGTSSESPAAQAPECLHPCRVSERSTETQSSPEPHWSTLTH 254

  Fly   677 SSC-LSSNES--GYDSDGGATGARLGNNLSISGGD----TESIASGTLKRNSLIS-----LSSSE 729
            |.| |..|.:  |.|......|.||.:....|..|    |.....|.|:|.|..|     |.:.|
Human   255 SHCSLLVNRALPGADPQDQQAGRRLSSGSVHSAADSSWPTTPSQRGFLQRRSKFSRPEFILLAGE 319

  Fly   730 GVGMGMGMSLGL-GAPSTRNS-------SICSAPVSLGGYNYDYETETIRRRFRQVKLERKCQ-E 785
            .     .|:|.| |:..|:..       .:|  .|.|.|.:                ||.||. |
Human   320 A-----PMTLHLPGSVVTKKGKSYLALRDLC--VVLLNGQH----------------LEVKCDVE 361

  Fly   786 DYIGIVLSPKTVMTNSNEQQY---RYL-------------IVELEPYGMAQKDGRLRLGDEIVNV 834
            ..:|.|.:..|...|..|..|   .|:             :.::.|.|..::..:..:     |.
Human   362 STVGAVFNAVTSFANLEELTYFGLAYMKSKEFFFLDSETRLCKIAPEGWREQPQKTSM-----NT 421

  Fly   835 NGKHLRGIQSFAEVQRLLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRHRLSYVQRTQS 899
            ....|| |:.|.....||...:              |...||.::|.|.:..:.:        .:
Human   422 FTLFLR-IKFFVSHYGLLQHSL--------------TRHQFYLQLRKDILEERLY--------CN 463

  Fly   900 TDSLSSMQSLQLQQERIQGHNTEQEQEAQG----EDQCDARSMASVSTMPTPMPLMQ-HRRSST- 958
            .:.|..:..|.||.|  .|:..:::.|::.    ||...|..:..::.:...:.:.: ||.||. 
Human   464 EEILLQLGVLALQAE--FGNYPKEQVESKPYFHVEDYIPASLIERMTALRVQVEVSEMHRLSSAL 526

  Fly   959 ----------------PRHSL-------DVGAPEHELL--------------------------R 974
                            |.:.:       :...||.|:.                          |
Human   527 WGEDAELKFLRVTQQLPEYGVLVHQVFSEKRRPEEEMALGICAKGVIVYEVKNNSRIAMLRFQWR 591

  Fly   975 RRARSSSGQRSLALTPT-----PLFASGSSS--------CSS-----------SPNHRLLDNEN- 1014
            ...:.|:.|:...:|.:     ..|.:.|:.        ||:           .|:|.|.|::. 
Human   592 ETGKISTYQKKFTITSSVTGKKHTFVTDSAKTSKYLLDLCSAQHGFNAQMGSGQPSHVLFDHDKF 656

  Fly  1015 -DPANDTDSYTPVYANRAASVCVASSLADDEKWQLLARKRCSEGSALSAT-----------PNPQ 1067
             ..||    .:|.:..|:..:.....|:..|....::|.:.:.|..||.:           ...:
Human   657 VQMAN----LSPAHQARSKPLIWIQRLSCSENELFVSRLQGAAGGLLSTSMDNFNVDGSKEAGAE 717

  Fly  1068 QFGQRTHYARNSI-------------NLANSHYRSLRFAHSRLSSSRLSLFMQAPPNSL------ 1113
            ..|:.....|..:             :|:....:|:   |:...::|...|:..|...:      
Human   718 GIGRSPCTGREQLKSACVIQKPMTWDSLSGPPVQSM---HAGSKNNRRKSFIAEPGREIVRVTLK 779

  Fly  1114 ---------TVGEG---------------VANTPSSTATTTTDLTNQQQQQQNQQQTHQSL---- 1150
                     .:.||               :...|:..|.|.      :...|.....|.||    
Human   780 RDPHRGFGFVINEGEYSGQADPGIFISSIIPGGPAEKAKTI------KPGGQILALNHISLEGFT 838

  Fly  1151 ------YIKHSPKSVSLF----------SPNPYVNASSSPASAST---SAGAGSSLAPPAAALMH 1196
                  .|::||.::.|.          :|:...|::::...:||   |.|...||.........
Human   839 FNMAVRMIQNSPDNIELIISQSKGVGGNNPDEEKNSTANSGVSSTDILSFGYQGSLLSHTQDQDR 903

  Fly  1197 HRPSLPVAKLTIRDEEMAEVIRASMS----EGSGRCTPKT-----------ITFFKGPGLKSLGF 1246
            :...|.:|.:    :.:...:|..:|    :|:|...|.:           :...|..|  :|||
Human   904 NTEELDMAGV----QSLVPRLRHQLSFLPLKGAGSSCPPSPPEISAGEIYFVELVKEDG--TLGF 962

  Fly  1247 SIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAETIGLFKNVREGT 1311
            |:.||.::.....||:||::.|.|.||.:|.:..||.:::::|..:.|::|.:.:...|.  .|.
Human   963 SVTGGINTSVPYGGIYVKSIVPGGPAAKEGQILQGDRLLQVDGVILCGLTHKQAVQCLKG--PGQ 1025

  Fly  1312 IVLKILRRKLQKA--------KSMG 1328
            :...:|.|::.::        .|||
Human  1026 VARLVLERRVPRSTQQCPSANDSMG 1050

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_524641.1 PDZ_canonical <815..868 CDD:483948 9/52 (17%)
PDZ3_PDZD2-PDZ1_hPro-IL-16-like 1231..1316 CDD:467240 24/95 (25%)
FRMPD2XP_054220869.1 KIND 15..197 CDD:214801 0/6 (0%)
FERM_F1_FRMPD2 341..434 CDD:340716 23/116 (20%)
B41 346..550 CDD:214604 44/249 (18%)
FERM_C_PTPH13 546..647 CDD:270008 11/100 (11%)
PDZ_canonical 772..863 CDD:483948 13/96 (14%)
PDZ2-PTPN13_FRMPD2-like 947..1033 CDD:467254 25/89 (28%)
PDZ3_PTPN13_FRMPD2-like 1078..1166 CDD:467181
Blue background indicates that the domain is not in the aligned region.

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