DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and Patj

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_766284.2 Gene:Patj / 12695 MGIID:1277960 Length:1834 Species:Mus musculus


Alignment Length:1163 Identity:223/1163 - (19%)
Similarity:381/1163 - (32%) Gaps:372/1163 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 HKSGSGGSSGPSSAKASASPTGGHQNSSGSTTSTLKKCKSGPI------ETIKQRHQQQQQQQQS 428
            |.:.:|.||.|:.|.        |:..|.......:..:..|.      |......:..|.||:.
Mouse   787 HSNNNGDSSEPADAV--------HEIHSSLILEAPQGFRDEPYLEELVDEPFLDLGKSLQFQQKD 843

  Fly   429 VQDVGTGQSQSAQSTPTHQFQAAARPQKALKNFFHRIGSTGMLNHRSHNL----LKASEA----- 484
            |       ..|:::...|:|.:.....:..:.        .||....:.|    |:|.|:     
Mouse   844 V-------DSSSEAWEMHEFLSPPLDGRGEER--------EMLVDEEYELYQDHLRAMESNPPPP 893

  Fly   485 -AQQATPAATTLYRSSST----SQLSSSSYVKCDDPTEGLNLQREQREQRLPRIASLKSSSCDDI 544
             .::|.||:..|...:.|    :.||....::|.|....::...::.:|        .|.|..|:
Mouse   894 HIREAAPASPVLELQAGTQWLHANLSGGERLECHDAESMMSAYPQEMQQ--------YSYSTADM 950

  Fly   545 AKVSSCLTASTSSGSAAGSLGSPPSSAAAGGGGTANSGQHDPSRRGAFP-----YAFLRSRLS-- 602
            .:.:..|.:.....|:.|                  :|||     |.|.     ::...|.|.  
Mouse   951 MEETFGLDSRAPIPSSEG------------------NGQH-----GRFDDMGHLHSLTSSSLDLG 992

  Fly   603 -VLPEENHGNVPGHLKQ--QIQRQREQHQQHQRDLLQQEQTSSP-----------------LPQR 647
             ::|.:..|  ||.|..  .:.::|||.......|......:.|                 ||:|
Mouse   993 MMIPSDLQG--PGVLVDLPAVAQRREQEDLPLYRLPSARVVTKPSSHMGLVSSRHANAACELPER 1055

  Fly   648 RSPEQAMLNNVSRNDSITSKDWEP-----LYQRLSSCLSSNESG--------------------- 686
            ...|.....|.|.        |.|     :::..:..|..:..|                     
Mouse  1056 EEGEGEETPNFSH--------WGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQ 1112

  Fly   687 --YDSDGGATGA-RLGNN-LSISGGD------TESIASGTLKRNSLI----SLSSSEGVGMGMGM 737
              .||..|.|.| :.|:. |.:||.|      .|::.:.....|.::    ||||:..|      
Mouse  1113 VLEDSPAGKTNALKTGDKILEVSGVDLQNASHAEAVEAIKSAGNPVVFVVQSLSSTPRV------ 1171

  Fly   738 SLGLGAPSTRNSSICSAPVSLGGYNYDYETE---------------------------------- 768
                 .|:..|.....||      |.|..|:                                  
Mouse  1172 -----IPTVNNKGKTPAP------NQDQNTQERKAKRHGTAPPPMKLPPPYRAPSADMEGSEEDC 1225

  Fly   769 -----TIRRRFRQVKLER---KCQEDYIGIVLSPKTVMTNSNEQQYRYLIVELEPYGMAQKDGRL 825
                 .||:|:..:..|.   :.::|..|:.||   :..|.:..:....:|.:.|.|.|..|||:
Mouse  1226 ALTDKKIRQRYADLPGELHIIELEKDKNGLGLS---LAGNKDRSRMSIFVVGINPEGPAAADGRM 1287

  Fly   826 RLGDEIVNVNGKHLRGIQSFAEVQRLLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRHR 890
            |:|||::.:|.:.|.| :|......::.: ....:.||...:|     |..:::.:.......|.
Mouse  1288 RIGDELLEINNQILYG-RSHQNASAIIKT-APTRVKLVFIRNE-----DAVSQMAVAPFPELSHS 1345

  Fly   891 LSYVQRTQSTDSLSSMQSLQLQQERIQGHNT----------------EQEQEAQGEDQ--CDAR- 936
            .|.|:....|:.:||.:...:..:.:....:                ||::|::..|.  |..: 
Mouse  1346 PSPVEDLGGTELVSSEEESSVDAKHLPEPESSKPEDLSQVVDDNMVAEQQKESESPDSAACQIKQ 1410

  Fly   937 -------SMASVSTMPTPMPLMQHRRSSTPRHSLDVGAPEHELLRRRARSSSGQRSLALTPTPLF 994
                   |.:|..:..:|.||.|...:       ||           ..|.:.|..|.:.|.|| 
Mouse  1411 QTYSTQVSSSSQDSPSSPAPLCQSAHA-------DV-----------TGSGNFQAPLPVDPAPL- 1456

  Fly   995 ASGSSSCSSSPNHRL--------------LDNENDPANDTDSYTPVYANRAASVCVASSLADDEK 1045
            :...::|...|...:              :....|...|......||...||:       .|...
Mouse  1457 SVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLDAIVIHEVYEEGAAA-------RDGRL 1514

  Fly  1046 W---QLL------ARKRCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSLRFAHSRLSSSR 1101
            |   |:|      .|....|.:..:....||:       .|..:....:.||         ....
Mouse  1515 WAGDQILEVNGVDLRSSSHEEAITALRQTPQK-------VRLVVYRDEAQYR---------DEEN 1563

  Fly  1102 LSLFM--QAPPNSLTVGEGVANTPSSTATTTTDL--------------------TNQQQQQQNQQ 1144
            |.:|:  ........:|..:....|.:....:|:                    .|.:..:...|
Mouse  1564 LEVFLVDLQKKTGRGLGLSIVGKRSGSGVFISDIVKGGAADLDGRLIRGDQILSVNGEDMRHASQ 1628

  Fly  1145 QTHQSLYIKHSPKSVSLFSPNPYVNASSSPASASTS-----------AGAGSSLAPPAAALMH-- 1196
            :|..:: :|.....|.|....  :.|.|..||..||           :....|.||...:|.:  
Mouse  1629 ETVATI-LKCVQGLVQLEIGR--LRAGSWAASRKTSQNSQGDQHSAHSSCRPSFAPVITSLQNLV 1690

  Fly  1197 --HRPSLPVAKLTIRDEEMAEVIRASMSEGSGRCTPKTITFFKGPGLKSLGFSIVGGRDSPKGNM 1259
              .|.|.|..|.|..:....|:|| .:|:                   :||.||.||:.||.|::
Mouse  1691 GTKRSSDPPQKCTEEEPRTVEIIR-ELSD-------------------ALGISIAGGKGSPLGDI 1735

  Fly  1260 GIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAETIGLFKNVREGTIVLKIL 1317
            .||:..:..:|.||....|:.||.||.|||..:.|:||.:.:.|.||. .|.|:|:::
Mouse  1736 PIFIAMIQANGVAARTQKLKVGDRIVSINGQPLDGLSHTDAVNLLKNA-FGRIILQVV 1792

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 23/92 (25%)
PDZ_signaling 1230..1317 CDD:238492 31/86 (36%)
PatjNP_766284.2 L27_2 8..65 CDD:312549
PDZ_signaling 135..218 CDD:238492
PDZ_signaling 248..325 CDD:238492
PDZ_signaling 363..450 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 456..488
PDZ_signaling 572..636 CDD:238492
PDZ 685..774 CDD:214570
PDZ_signaling 1072..1163 CDD:238492 14/90 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1171..1219 8/64 (13%)
PDZ 1242..1327 CDD:214570 23/89 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1340..1453 22/130 (17%)
MPDZ_u10 <1453..1468 CDD:374710 4/15 (27%)
PDZ 1469..1554 CDD:214570 15/98 (15%)
PDZ_signaling 1566..1646 CDD:238492 10/80 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1657..1676 3/18 (17%)
PDZ_signaling 1707..1792 CDD:238492 35/105 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1811..1834
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19964
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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