DRSC/TRiP Functional Genomics Resources

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Protein Alignment a and lnx1

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:XP_017950997.2 Gene:lnx1 / 100487348 XenbaseID:XB-GENE-952178 Length:742 Species:Xenopus tropicalis


Alignment Length:861 Identity:159/861 - (18%)
Similarity:263/861 - (30%) Gaps:326/861 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   518 GLNLQREQREQRLPRIASLKSSSCDDIAKVSSCLTASTSSGSAAGSLGSPPSSAAAG-GGGTANS 581
            ||..:|::|.|             |..|..||.|..:.::       .||..||:|. ...|..:
 Frog   140 GLTKERKRRSQ-------------DSSADCSSSLDLTVAA-------VSPELSASAAIALATEET 184

  Fly   582 GQHDPSRRGAFPYAFLRSRLSVLPEENHGNVPGHLKQQIQRQREQHQQHQRDLLQQEQTSSPLPQ 646
            ||.:|    ||..|...|..:...|||           .:..|.:::..:|..:           
 Frog   185 GQDNP----AFSPAKGESHTACEAEEN-----------CRLNRNRNRNFERSTV----------- 223

  Fly   647 RRSPEQAMLNNVSRNDSITSKDWEPLYQRLSSCLSSNESGYDSDGGATGARLGNNLSISGGDTES 711
             ||.....||                  |..|.|...:||                         
 Frog   224 -RSLSFKKLN------------------RAFSVLRRTKSG------------------------- 244

  Fly   712 IASGTLKRNSLISLSSSEGVGMGMGMSLGLGAPSTRNSSICSAPVSLGGYNY---DYETETIRRR 773
                    :|::..|..|...:             :|::|...|:.|....:   |.|...|   
 Frog   245 --------SSVVHASDRERANL-------------QNANIVEDPMGLPRQYHLIPDGEITCI--- 285

  Fly   774 FRQVKLERKCQEDYIGIVLSPKTVMTNSNEQQYRYLIVE-LEPYGMAQKDGRLRLGDEIVNVNG- 836
                |:.|....:.:||.:      ...||.....:|:: :...|:..:||||..||.|:.||| 
 Frog   286 ----KINRADLNEILGIRI------VGGNETPLTQIIIQHIYQDGVIGRDGRLLPGDMILKVNGI 340

  Fly   837 -----KHLRGIQSFAEVQRLLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRH-----RL 891
                 .|...:....:..::|               .:|.:.:...|.|.:|::.::|     .:
 Frog   341 DISSVPHTYALSVLRQPSKVL---------------RLTVLREQRYKCRTNGVNMEQHSPQDDSI 390

  Fly   892 SYVQRTQSTDSLSSMQSLQLQQE-------RIQGHNTEQEQEAQGEDQCDARSMASVSTMPTPMP 949
            ..|....|.|....::.::.:.|       .::|....::...|..|                  
 Frog   391 HVVLNKSSHDVQLGIKLVRRRDEPGIYIFNLLEGGVAARDGYLQEND------------------ 437

  Fly   950 LMQHRRSSTPRHSLDVGAPE-------------HELLRRRARSSSGQRSLALTPTPLFASGSSSC 1001
                |..|...|.|..|.||             :.::.|.:|..        ||..|..:...:.
 Frog   438 ----RVLSINGHDLRNGTPEIAAQLIQASEEGVYFIVSRHSRHQ--------TPDILQEARWHNN 490

  Fly  1002 SSSPNHRLLDNENDPANDTDSYTPVYANRAASV----------CVASSLADDEKWQL-------- 1048
            :.||  ....||.:..|...|.|.:...:..|:          .||.. |.:.:|.|        
 Frog   491 NDSP--ATCTNERNYFNKNASRTVLCHEKVVSITKDNTESLGMTVAGG-ASNWEWDLPIFVTSVD 552

  Fly  1049 ----LARK-RCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSLRFAHSRLSSSRLSLFMQA 1108
                :.|. |...|..|...              |.|||...         ||  |..:||... 
 Frog   553 ADGVIGRDGRLKTGDILLNV--------------NGINLTGV---------SR--SEAVSLLKN- 591

  Fly  1109 PPNSLTVGEGVANTPSSTATTTTDLTNQQQQQQNQQQTHQSLYIKHSPKSVSLFSP--NPYVNAS 1171
                        ::.||......::...:.::.|........|:::..:....:||  ..::|  
 Frog   592 ------------SSSSSVVLKALEIKEYEPEEDNLNNALYMDYLQNGSEQNREWSPVWVMWLN-- 642

  Fly  1172 SSPASASTSAGAGSSLAPPAAALMHHRPSLPVAKLTIRDEEMAEVIRASMSEGSGRCTPKTITFF 1236
                                  |.|:..|            ..||:....:.|            
 Frog   643 ----------------------LPHYLYS------------CREVVLRRNTAG------------ 661

  Fly  1237 KGPGLKSLGFSIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAETI 1301
                  |||||||||.|........|:|::.....|..||.|:.||.::|:||....||.:...:
 Frog   662 ------SLGFSIVGGSDDCSRIKPFFIKSILEGTPAHHDGRLRCGDILLEVNGRCTSGMPYNSLV 720

  Fly  1302 GLFKNVREGTIVLKIL 1317
            .:.|.:| |.:||.|:
 Frog   721 RMLKEIR-GRVVLTIV 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 20/96 (21%)
PDZ_signaling 1230..1317 CDD:238492 28/86 (33%)
lnx1XP_017950997.2 mRING-HC-C3HC3D_LNX1 43..84 CDD:319693
PDZ_signaling 282..366 CDD:238492 22/111 (20%)
PDZ_signaling 390..470 CDD:238492 14/101 (14%)
PDZ_signaling 516..>585 CDD:238492 17/94 (18%)
PDZ_signaling 651..735 CDD:238492 31/102 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19964
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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