DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment a and whrn

DIOPT Version :9

Sequence 1:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster
Sequence 2:XP_012824768.2 Gene:whrn / 100486736 XenbaseID:XB-GENE-989669 Length:996 Species:Xenopus tropicalis


Alignment Length:1169 Identity:245/1169 - (20%)
Similarity:369/1169 - (31%) Gaps:452/1169 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 SGPSSAKASASPTG-------GHQNSS--GSTTSTLKKCKSGPIETIK---QRHQQQQQQQQSVQ 430
            |||    ...||.|       |..|||  ||.:|.:.:..|..:..:.   .|....|:::|.:.
 Frog     5 SGP----VHRSPGGSINQSFRGSINSSSCGSISSDVGRVLSMNVRRLHGALNRLLTDQEREQLLH 65

  Fly   431 DVGTGQSQSAQSTPTHQFQAAARPQKALKNFFHRIGSTGMLNHRSHNLLKASEAAQQATPAATTL 495
            .:....|:..........:...|||...:.|               .||:.      ..|.:..|
 Frog    66 CLRLYHSRRNVCDLVRTLRLILRPQDQRQLF---------------PLLRL------VIPRSDQL 109

  Fly   496 YRSSSTSQ--------LSSSSYVK-CDDPTEGLNLQREQREQRLPRIASLKSSSCDDIAKVSSCL 551
            .....||:        |.||.|.. ..|...|.:.|       ||..|.|.|:|....|.     
 Frog   110 LFDQYTSEGLYLKDLSLGSSGYNNVLSDKVLGFSPQ-------LPGPAPLFSTSVPGTAP----- 162

  Fly   552 TASTSSGSAAGSLGSP-PSSAAAGGGGTANSGQHDPSRRG---AFPYAFLRSRLSVLPEENHGNV 612
            ..:||...||.:..:| |.:|.|          ..|...|   ||....|.:.|...| ...|..
 Frog   163 AFNTSVPGAAPAFSTPLPGTAPA----------FSPPVTGISPAFSSPVLGTPLMHRP-PYPGAP 216

  Fly   613 PGHLKQQIQRQREQHQQHQRDLLQQEQTSSPLPQRRSPEQAMLNNVSRNDSITSKDWEPLYQRLS 677
            ||.                          |..|.|.:|.:.....:.||                
 Frog   217 PGF--------------------------SNSPPRANPTEVRQVTLKRN---------------- 239

  Fly   678 SCLSSNESGYDSDGGATGARLGNNLSISGGDTESIASGTLKRNSLI---SLSSSEGVGMGMGMSL 739
                .|:.|           ||  .||.||    :..||....||:   ||:..||:.:|..:..
 Frog   240 ----RNQEG-----------LG--FSIRGG----VEHGTGIYVSLVEPGSLAEQEGLRVGDQILK 283

  Fly   740 GLGAPSTRNS----------------SICSAPVSLGGY--NYDYE-------------------- 766
            ..|.|..|.:                |:.|:....||:  ::.|.                    
 Frog   284 ANGRPLDRVTHAEAVKALRGSQKLVLSVLSSGRIPGGHISSHIYTWVDAHGRSVSPPRGPPHLQS 348

  Fly   767 -----TETIRRRFRQVKLERKCQEDYIGIVL----SPKTVMTNSNEQQYRYLIVELEPYGMAQKD 822
                 ||..:|  ..::|.::..|..:.:||    |...::....|......|..::....|:..
 Frog   349 PLLAGTEQEKR--SHLQLLQEGDEKKVNLVLGEGSSLGLLIRGGAEYSLGIYITGVDKGSEAESA 411

  Fly   823 GRLRLGDEIVNVNGKHLRGIQSFAEVQRLLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDG---- 883
            | |::||:|:::||                |||      |.|.|||.         :||.|    
 Frog   412 G-LKVGDQILDING----------------SSF------LSIPHDEA---------VRILGSSRH 444

  Fly   884 -MSTQR------HRLSYVQRTQ----------------------STDS----------------L 903
             |.|.|      |..:.|..||                      |:||                |
 Frog   445 LMMTVRDVGRIPHARTIVDETQWLTSSYTGNGEPQPSLGTLSDTSSDSLVKPVFCRGPTGSQVTL 509

  Fly   904 SSM--QSLQLQQERIQGHNTEQEQEA------QGED---QCDARSMASVSTMPT------PMPLM 951
            ||:  |:|.|.:|:.:...||.|:..      |.:|   ...|..||....:.|      ...|:
 Frog   510 SSLGNQTLVLLEEKARLLLTEPERSTMSYYLQQYKDHHISVQALIMAMFELLNTQAKVTATFSLL 574

  Fly   952 QHRRSS-TPRHSLDVGAPEHELLRR-----RARSSSGQRSLALTPTPLFASGSS----SCSSSPN 1006
            ...||. .|:   |:...::.:|:|     ::|..||.....|:.|...:|..|    |.:|:..
 Frog   575 SELRSQILPQ---DLAVFDNLVLKREIESMKSRQRSGDTVSVLSQTLSTSSSESHQTVSTASTAR 636

  Fly  1007 HRLL------DNENDPANDTDSYTPVYANRAASVCVASSLADDEKWQLLAR-------------- 1051
            .|||      :|..||...:||       |:.:......::.|:...||..              
 Frog   637 ERLLWLLDVMENGTDPEGSSDS-------RSLTQTTLPDISLDDVNSLLEEPPNFQPAPPQSAVQ 694

  Fly  1052 -------------KRCSEGSALS----------------------ATPNPQQFGQRTHYARNSIN 1081
                         :|.|.||:.|                      |:|:.:...|..:       
 Frog   695 NAPQLRRQGRERAQRPSSGSSQSGLFFTVPSTNPSPPLPPLTSPPASPSSENSSQAIY------- 752

  Fly  1082 LANSHYRSLRFAHSRLSSSRLSLFMQAP---------PNSLTVGEGVANTPSSTATTTTDLTNQQ 1137
              .:|  |.:.....|..::|:|..|.|         |..|.|...:.:.|.||       ||.:
 Frog   753 --TNH--SSKITSPSLPPAQLALVTQHPLTPFPRVQSPTRLKVLGEIPSHPPST-------TNGE 806

  Fly  1138 QQQQNQQQTHQSLYIKHSPKSVSLFSPNPYVNASSSPASASTSAGAGSSLAPPAAALMHHRPSLP 1202
            ....|.|  |..:...|.|.|      .|.||    ...|.....|...|:|||:          
 Frog   807 ASDNNSQ--HFVMVEVHRPNS------EPDVN----EIRAVPQTRAVLPLSPPAS---------- 849

  Fly  1203 VAKLTIRDEEMAEVIRASMSE----GSGRCTP---KTITFFKG-------PGL------------ 1241
            :::|:...:.::|.......:    ||...:|   ||    ||       |||            
 Frog   850 LSQLSDSGQTLSEDSGVDAGDVGGGGSKDSSPQPQKT----KGCEGLQKPPGLLEPTATLVRVKK 910

  Fly  1242 --KSLGFSIVGGRDS----PKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAE 1299
              .|||.:|.||..:    |:      :.|:...|.|.:...|:.|..|:|:||.|:||..|.|
 Frog   911 TAPSLGIAIEGGAKTRQPLPR------IVTIQRGGSAHNCSKLKVGQVILEVNGISMQGKEHRE 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 19/93 (20%)
PDZ_signaling 1230..1317 CDD:238492 29/98 (30%)
whrnXP_012824768.2 harmonin_N_like 40..117 CDD:416392 14/97 (14%)
PLN02983 <144..>217 CDD:215533 24/95 (25%)
PDZ_signaling 231..312 CDD:238492 23/117 (20%)
PDZ_signaling 370..450 CDD:238492 27/111 (24%)
HN_L-whirlin_R2_like 513..597 CDD:259823 19/86 (22%)
PDZ_signaling 905..976 CDD:238492 21/70 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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