DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and HMGB2

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_564123.1 Gene:HMGB2 / 838658 AraportID:AT1G20693 Length:144 Species:Arabidopsis thaliana


Alignment Length:86 Identity:18/86 - (20%)
Similarity:31/86 - (36%) Gaps:24/86 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VCFGLAREHNSFTIIFLQIKPNTINTDNLEFMSEHRNLLIYLGLPWSNIASCRSIVALAIAVERA 116
            :|..:.:|..|..:        ||:...|.| .:||         :||:..|...:|      ||
plant    84 ICLDILKEQWSPAL--------TISKVTLIF-QKHR---------FSNVRLCSKSIA------RA 124

  Fly   117 TAVCVPLLYRTITLKIPNFCI 137
            :.....:|.....|.:...|:
plant   125 STFSARILLNAQALLLECLCM 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848
HMGB2NP_564123.1 HMG-box_AtHMGB1-like 39..99 CDD:438821 3/22 (14%)
Blue background indicates that the domain is not in the aligned region.

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