DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and sox13

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:XP_012818604.1 Gene:sox13 / 549758 XenbaseID:XB-GENE-481889 Length:577 Species:Xenopus tropicalis


Alignment Length:580 Identity:172/580 - (29%)
Similarity:237/580 - (40%) Gaps:186/580 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EKEHSDLGMIKQLQLIRNRILSQAHYDSMTDIDASAQQQQQLQNVQRLQHESCLQELHNHLSSQY 75
            |||...|.||.||..:|:::|| ||.:.........::|||...:.|.|.|..::: ...|..|.
 Frog   133 EKELQLLFMIHQLTRLRDQLLS-AHSEHRNMAAMLFEKQQQQMELARQQQEQIVKQ-QQQLIQQQ 195

  Fly    76 GAVRFTAANPQHQNQQAVSVSSGNLMPF--LPAFLQPPMPNAQQLLQL-IPGHENAQSVPTHHHS 137
            ..:.......||.|           ||:  :|||  ||........|: :|    .|.:|.....
 Frog   196 HKINLLQQQIQHVN-----------MPYVMIPAF--PPAQTVTADPQMSLP----IQPIPCKPVE 243

  Fly   138 HPQSEAFSTHKMALAPMWSTAAVAAAHIQAALAAAAVAAANNNKNSSHFSNNTNIVGLATRGNEL 202
            :|         |:|....:|....:|..|..                  |...|:....|  :::
 Frog   244 YP---------MSLLHNSTTRGSVSAKRQET------------------SQPLNLTAKPT--DQV 279

  Fly   203 LNTDSDPQMEIGETRRGGNGGSCRSRPESPTYENPPYEILSYSHNTPPESPHGRTADCSKNFSPS 267
            .|:.|.|:..:...  |..|||......||...|.|...|                         
 Frog   280 PNSRSSPKYRMSPV--GSQGGSSMDSASSPQKANLPLGFL------------------------- 317

  Fly   268 PTDNLSIASVSEAQDSEMDAPLNLSKPKGSPSSSPNSSSQRDHCENLTPVVSSPPLSWHQGQPHY 332
                           .|.||   ::|       :...:.|..|.:|.:|.        |..|.:.
 Frog   318 ---------------GEGDA---ITK-------AIQEACQLLHGQNTSPE--------HHQQKYR 349

  Fly   333 AEI--ELPLLKSHGRVWNSAVACSGGSRATRVSRDSVNSCGTNSERSAALDPESLNSGQLGPVPA 395
            .|:  .||    ...|.:.|        :.:.:.:||..|..:.:                    
 Frog   350 KELLDTLP----EKEVQDGA--------SLQHTEESVLGCNMDID-------------------- 382

  Fly   396 SPSSQPLRQGNGHGHGGNHGHVHSKPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGAR 460
                            |:.|     .|||||||||||||||||||||:|.||||||:||||||:|
 Frog   383 ----------------GSRG-----SHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSR 426

  Fly   461 WKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPKRTCIVDGKKMRISEYKVLMRNRRAEMRQ 525
            ||:||||:||||||||:|||:.|:|::|||:|:|||||||||:||::|:.|||.||:|||.:.||
 Frog   427 WKSMSNAEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTCIVEGKRLRVGEYKALMKNRRQDTRQ 491

  Fly   526 LWCRTGGVSGGSGSLCADACPKGSGGSNSQVAVAAAAAVYHLQDMASSAASTAH--GHDC 583
                 |.|....|:|   .||....|.:||          .|.|..|...|:.|  ..||
 Frog   492 -----GYVITSIGAL---QCPPSPSGFSSQ----------SLLDNLSQLPSSDHYNPQDC 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848 61/76 (80%)
sox13XP_012818604.1 HMG-box_SoxD 388..464 CDD:438839 61/75 (81%)

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