DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and sox1a

DIOPT Version :9

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_001002483.1 Gene:sox1a / 436756 ZFINID:ZDB-GENE-040718-186 Length:336 Species:Danio rerio


Alignment Length:261 Identity:88/261 - (33%)
Similarity:113/261 - (43%) Gaps:80/261 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   386 NSGQLGPVPASPSSQPLRQGNGHGHGGNHGHVHSKPHIKRPMNAFMVWAKDERRKILKACPDMHN 450
            |.||.||                    |.|...::..:||||||||||::.:|||:.:..|.|||
Zfish    20 NPGQTGP--------------------NSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN 64

  Fly   451 SNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPKRTCIVDGKKMRISEYKVL 515
            |.|||.|||.||.||.|:|:|:.:|..||..:||::||||:||||.|...::  ||.:.|....|
Zfish    65 SEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLL--KKDKYSLAGGL 127

  Fly   516 MRNRRAEMRQLWCRTGGVSGGSGSLCADA-----CPKGSGGSNS----------------QVAVA 559
            :              ||..||.|...|..     .|.|.|.|.|                |||.|
Zfish   128 L--------------GGAGGGVGMSPAGVGQRLESPGGHGSSASAGYAHMNGWANGTYSGQVAAA 178

  Fly   560 AAAAVYHLQD----MASSAASTAHGHDCGHTPPQQ-----------FFYPP-------ESLSPSG 602
            ||||.. :|:    .:....|.:|.|...|..|..           ..|.|       .|.||||
Zfish   179 AAAAAM-MQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASPSG 242

  Fly   603 F 603
            :
Zfish   243 Y 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 SOX-TCF_HMG-box 422..493 CDD:238684 40/70 (57%)
sox1aNP_001002483.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 7/38 (18%)
SOX-TCF_HMG-box 36..107 CDD:238684 40/70 (57%)
SOXp 106..>194 CDD:289133 29/104 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..216 5/22 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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