DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and Sox21b

DIOPT Version :9

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_001261829.1 Gene:Sox21b / 39569 FlyBaseID:FBgn0042630 Length:587 Species:Drosophila melanogaster


Alignment Length:426 Identity:117/426 - (27%)
Similarity:165/426 - (38%) Gaps:115/426 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 LSYSHNTPPESP-------HGRTADCSKNFSPSPTDNLSIASVSEAQDSEMDAPLNLSKPKGSPS 299
            |::.|:.|.:||       |...:..|.|.||:.:..|.:...|....:...:.|:...|.|   
  Fly    67 LNHQHHHPHQSPQHQQQHQHHPCSSNSSNGSPNGSTGLGLHPHSALHLAHHHSQLHQHHPAG--- 128

  Fly   300 SSPNSSSQRDHCENLTPVVSSPPLSWH-QGQPHYAEIELPLLKSHGRVWNSAVACSGGSRATRVS 363
                  .|:.|.:   |.|||...|.| |.|          ..||....|.:....|||.:   .
  Fly   129 ------QQQQHSQ---PPVSSSSTSHHSQSQ----------ALSHQTHSNGSSQLGGGSAS---G 171

  Fly   364 RDSVNSCGTNSERSAALDPESLNSGQLGPVPASPSSQPLRQGNGHGHGG---NHGHVHS------ 419
            ..||.....||..||......:.:.....:..:..:.|:  .|.|.:.|   |.|...|      
  Fly   172 AGSVAGGAANSHHSAPASSSVMAAAAAAHLHHNSQASPI--SNLHQNMGSLMNSGSSASDVFFSL 234

  Fly   420 ----------KPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYE 474
                      :.||||||||||||::.:||||.:..|.||||.|||.|||.||.::..:|:|:.:
  Fly   235 MIQNTTKRQNEEHIKRPMNAFMVWSRLQRRKIAQDNPKMHNSEISKRLGAEWKLLTEEEKRPFID 299

  Fly   475 EQSRLSKLHMEQHPDYRYRPRPKRTCIVDGKKMRISEYKVLMRNRRAEMRQLWCRTGGVSGG--- 536
            |..||..:||::||||:||||.|      .|.:|...|...|......:..|   ..|::.|   
  Fly   300 EAKRLRAMHMKEHPDYKYRPRRK------PKALRRDGYPYPMPYPSVPVEAL---RAGITPGYFA 355

  Fly   537 ---------------------------SGSLCADACPKGSGGSNSQVAVAAAA------------ 562
                                       ||.:...|..:.|..|||..|.|.:|            
  Fly   356 PGPTAAAYHLGSHLGQTSTPTTTQATLSGQMDKFALERSSYLSNSSQASAYSAYLDPSVLTKAYF 420

  Fly   563 --AVYHLQDMASSAA---STAHG---HDCGHTPPQQ 590
              .:|  ||.|::.|   |..:|   |...|...||
  Fly   421 DSKMY--QDRAANYAFDISKIYGAQQHAAAHHQQQQ 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 SOX-TCF_HMG-box 422..493 CDD:238684 40/70 (57%)
Sox21bNP_001261829.1 SOX-TCF_HMG-box 247..318 CDD:238684 40/70 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451310
Domainoid 1 1.000 46 1.000 Domainoid score I3058
eggNOG 1 0.900 - - E1_KOG0527
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.740

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