DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox102F and hmgb1

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_989226.1 Gene:hmgb1 / 394834 XenbaseID:XB-GENE-1001206 Length:211 Species:Xenopus tropicalis


Alignment Length:10 Identity:5/10 - (50%)
Similarity:6/10 - (60%) Gaps:0/10 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 ANRLALLDTC 234
            |.|:.|.|.|
 Frog   200 AQRMPLCDKC 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848
hmgb1NP_989226.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 93..163 CDD:438795
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.