DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and HmgD

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster


Alignment Length:53 Identity:18/53 - (33%)
Similarity:29/53 - (54%) Gaps:4/53 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   420 KPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPY 472
            ||  |||::|:|:|....|..|.:..|.:..:.::|..|..|:||.  ||..:
  Fly     4 KP--KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEW 52

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848 17/52 (33%)
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 15/48 (31%)

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