DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox102F and HmgZ

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster


Alignment Length:99 Identity:24/99 - (24%)
Similarity:33/99 - (33%) Gaps:28/99 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 GLPWSNIASCRSIV-----ALAIAVERATAVCVPLLYRTITLKIPNFCIFLFAVAYGLFENVVLY 153
            ||.|.:|.|  .|.     |.:.:.||.|.||......|..|.:                .|:..
  Fly   186 GLYWKSIPS--KIAGQEGQATSSSGERVTVVCCTNAAGTHKLDL----------------TVIGK 232

  Fly   154 GFCGFDEDLIPATCTQF-----GCAINKCFYNYF 182
            ..|.:.|...|.|...:     |.|..:.|.|:|
  Fly   233 TKCPWSEQSEPKTSVNYYEMKSGWASKEIFRNWF 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.