DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and Hmg-2

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_611553.1 Gene:Hmg-2 / 37407 FlyBaseID:FBgn0026582 Length:376 Species:Drosophila melanogaster


Alignment Length:397 Identity:69/397 - (17%)
Similarity:118/397 - (29%) Gaps:185/397 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 QRKREMGLFYYRFVLDVCFGLAREHNSFTII---------FLQIKP-----NTINTDNLEFMSEH 86
            :|:..||:......|....|..::|....::         |::::.     :|:|..||:...: 
  Fly   260 RREMAMGVMTRIEDLHTVLGQTQDHRHRVLVAAAKNLKNWFVKVRKIKAIYHTLNLFNLDVTQK- 323

  Fly    87 RNLLIYLGLPWSNIASCRSI-VALAIAVERATAVCVPLLYRTITLKIP----------------- 133
                ..:...|..:....:| :||....||:.:...|:|.|..|.:.|                 
  Fly   324 ----CLIAECWVPLLDFETIQIALRRGTERSGSSVPPILNRMETFEDPPTYNRTNKFTHAFQALI 384

  Fly   134 --------------NFCI----FLFAVAYG---------LF----------------EN------ 149
                          .:.|    |||||.:|         ||                :|      
  Fly   385 NAYGVASYREMNPAPYTIITFPFLFAVMFGDLGHGTIMALFGLWMVLKEKPLAAKKSDNEIWNIF 449

  Fly   150 ------VVLYG----FCGF-DEDLIPATCTQFGCA------------------------------ 173
                  :.|.|    :.|| ..|:...:...||.|                              
  Fly   450 FGGRYIIFLMGVFSMYTGFVYNDIFSKSLNVFGSAWSTNYNTSTVMSNKALQLNPKGMDYAQTPY 514

  Fly   174 ------------INK-CFYNYFMLQRSIVFSI-----NVFVSIVLSIKLLFWNKKQSQQQHKNNN 220
                        :|| .|.|.:.::.||:|.:     .|||.:.                   |:
  Fly   515 PFGLDPVWQVAPLNKIIFQNAYKMKISIIFGVIHMLFGVFVGLF-------------------NH 560

  Fly   221 KLSKANRLALLDTC--------TVFLFDFIPVFCGGMWPHIFSIEVLGPFTVVMKIIGCAIESTV 277
            :..| |::|:.  |        .||||.::.:.....|     ::.....|.|:...|||     
  Fly   561 RYFK-NKMAIY--CEFIPQVIFLVFLFFYMTLLMFIKW-----VKYSASATDVVYSEGCA----- 612

  Fly   278 VSILLKF 284
            .|||:.|
  Fly   613 PSILITF 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848
Hmg-2NP_611553.1 HMG-box_HMG20 75..154 CDD:438796
Blue background indicates that the domain is not in the aligned region.

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