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Protein Alignment Sox102F and HMGB1
DIOPT Version :10
| Sequence 1: | NP_001014695.1 |
Gene: | Sox102F / 43844 |
FlyBaseID: | FBgn0039938 |
Length: | 618 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_002119.1 |
Gene: | HMGB1 / 3146 |
HGNCID: | 4983 |
Length: | 215 |
Species: | Homo sapiens |
| Alignment Length: | 73 |
Identity: | 22/73 - (30%) |
| Similarity: | 40/73 - (54%) |
Gaps: | 0/73 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 424 KRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHP 488
|||.:||.::..:.|.||....|.:...:::|.||..|...:..|||||.::.::|.:.:.:...
Human 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA 160
Fly 489 DYRYRPRP 496
.||.:.:|
Human 161 AYRAKGKP 168
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| Sox102F | NP_001014695.1 |
HMG-box_EGL13-like |
421..498 |
CDD:438848 |
22/73 (30%) |
Software error:
Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.
For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message
and the time and date of the error.