DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox102F and Sox3

DIOPT Version :9

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_033263.2 Gene:Sox3 / 20675 MGIID:98365 Length:450 Species:Mus musculus


Alignment Length:373 Identity:102/373 - (27%)
Similarity:142/373 - (38%) Gaps:108/373 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 SRPESPTYENPPYEILSYSHNTPPESPHGRTADCSKNFSPSPTDNLSIASVSEAQDSEMDAPLNL 291
            |.|..|  |.|....||   .||.|||...|.......:|||...|:....:.|..|.::.  .|
Mouse    27 SLPFPP--ELPARRPLS---TTPTESPGLFTVAAPAPGAPSPPATLAHLLPAPAMYSLLET--EL 84

  Fly   292 SKPKGSPSSSPNSSSQRDHCENLTPVVSSPPLSWHQGQPHYAEIELPLLKSHGRVWNSAVACSGG 356
            ..|.|.|:.:..           |.|.::|                      |....|....:||
Mouse    85 KNPVGPPTPAAG-----------TGVPAAP----------------------GAAGKSGANPAGG 116

  Fly   357 SRATRVSRDSVNSCGTNSERSAALDPESLNSGQLGPVPASPSSQPLRQGNGHGHGGNHGHVHSKP 421
            :.|.                         |.|..|             .||.|.||..|. ..:.
Mouse   117 ANAG-------------------------NGGSGG-------------ANGGGGGGGGGG-SDQD 142

  Fly   422 HIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQ 486
            .:||||||||||::.:|||:....|.||||.|||.|||.||.:::|:|:|:.:|..||..:||::
Mouse   143 RVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKE 207

  Fly   487 HPDYRYRPRPKRTCIVDGKKMRISEYKVLMRNRRAEMRQLWCRTGGVSGG---SGSLCADACPKG 548
            :|||:||||.|...::  ||.:.|                      :.||   .|:..|.|....
Mouse   208 YPDYKYRPRRKTKTLL--KKDKYS----------------------LPGGLLPPGAAAAAAAAAA 248

  Fly   549 SGGSNSQVAVAAAAAVY-HLQDMASSAASTAHGHDCGHTPPQQFFYPP 595
            :..::|.|.|......| |:...|:.|.|... ...|:..|.....||
Mouse   249 AAAASSPVGVGQRLDTYTHVNGWANGAYSLVQ-EQLGYAQPPSMSSPP 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 SOX-TCF_HMG-box 422..493 CDD:238684 37/70 (53%)
Sox3NP_033263.2 SOX-TCF_HMG-box 143..214 CDD:238684 37/70 (53%)
SOXp 213..306 CDD:289133 25/108 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838557
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.