DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox102F and Sox13

DIOPT Version :9

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:XP_011246247.1 Gene:Sox13 / 20668 MGIID:98361 Length:621 Species:Mus musculus


Alignment Length:555 Identity:167/555 - (30%)
Similarity:242/555 - (43%) Gaps:157/555 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EDQTNEKEHSDLGMIKQLQLIRNRILSQAHYDSMTDIDASAQQQQQLQNVQRLQHESCLQELHNH 70
            ::...|||...|.||.||..:|:::|: ||.:.........::|||...:.|.|.|...::....
Mouse   143 QESLAEKELQLLVMIHQLSALRDQLLT-AHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQL 206

  Fly    71 LSSQYGAVRFTAANPQHQNQQAVSVSSGNLMPF--LPAFLQPPMPNAQQLLQLIPGHENA---QS 130
            :..|:      ..|...|..|.|:      ||:  :|||     |.:.|.|.:.|..:.|   |.
Mouse   207 IQQQH------KINLLQQQIQQVN------MPYVMIPAF-----PPSHQPLPVTPDSQLALPIQP 254

  Fly   131 VPTHHHSHPQSEAFSTHKMALAPMWSTAAVAAAH-IQAALAAAAVAAANNNKNSSHFSNNTNIVG 194
            :|.....:|.....|..    ||:...:.|||.| :|.......:.|                  
Mouse   255 IPCKPVEYPLQLLHSPP----APVVKRSGVAAHHPLQEPPQPLNLTA------------------ 297

  Fly   195 LATRGNELLNTDSDPQMEIGETRRGGNGGSCRSRPES---PTYENPPYEILSYSHNTPPESPHGR 256
             ..:..||.||.|.|.:::         .||..||.|   ||.:         ..::||..|.|.
Mouse   298 -KPKVPELPNTSSSPSLKM---------NSCGPRPASHGAPTRD---------LQSSPPSLPLGF 343

  Fly   257 TADCSKNFSPSPTDNLSIASVSEAQDSEMDAPLNLSKPKGSPSSSPNSSSQRDHCENLTPVVSSP 321
            ..:..              :|::|   ..||...|....|:..:|||:..::|    |..:.|||
Mouse   344 LGEGD--------------AVTKA---IQDARQLLHSHSGALENSPNTPFRKD----LISLDSSP 387

  Fly   322 PLSWHQGQPHYAEIELPLLKSHGRVWNSAVACSGGSRATRVSRDSVNSCGTNSERSAALDPESLN 386
                                :..|:..|.|         ....:::.||..:..|..:   ||.|
Mouse   388 --------------------AKERLEESCV---------HPLEEAMLSCDMDGSRHFS---ESRN 420

  Fly   387 SGQLGPVPASPSSQPLRQGNGHGHGGNHGHVHSKPHIKRPMNAFMVWAKDERRKILKACPDMHNS 451
            |.                                 |||||||||||||||||||||:|.||||||
Mouse   421 SS---------------------------------HIKRPMNAFMVWAKDERRKILQAFPDMHNS 452

  Fly   452 NISKILGARWKAMSNADKQPYYEEQSRLSKLHMEQHPDYRYRPRPKRTCIVDGKKMRISEYKVLM 516
            :||||||:|||:|:|.:||||||||:|||:.|:|::|||:|:|||||||:|:|:::|:.|||.||
Mouse   453 SISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRRLRVGEYKALM 517

  Fly   517 RNRRAEMRQLWCRTGGVSGGSGSLCADAC-PKGSG 550
            |.||...||.:  |.....|...:.:|.. |:.:|
Mouse   518 RTRRQGARQSY--TIPPQAGQAQVSSDILFPRAAG 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 SOX-TCF_HMG-box 422..493 CDD:238684 55/70 (79%)
Sox13XP_011246247.1 Atrophin-1 <231..>340 CDD:367360 35/154 (23%)
SOX-TCF_HMG-box 423..494 CDD:238684 55/70 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838572
Domainoid 1 1.000 128 1.000 Domainoid score I5294
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 204 1.000 Inparanoid score I3733
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42560
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45789
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5247
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.980

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