DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and sox10

DIOPT Version :9

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_571950.1 Gene:sox10 / 140616 ZFINID:ZDB-GENE-011207-1 Length:485 Species:Danio rerio


Alignment Length:313 Identity:90/313 - (28%)
Similarity:127/313 - (40%) Gaps:77/313 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 LSKPKGSPSSSPNSSSQRDHCENLTPVVSSPPLSWHQGQPHYAEIELPLLKSH-GRVWNSAVACS 354
            :|..:.|.|....|....|...:::|..||       |.|..|:..||..:|. ..:.:.....|
Zfish     1 MSAEEHSMSEVEMSPGVSDDGHSMSPGHSS-------GAPGGADSPLPGQQSQMSGIGDDGAGVS 58

  Fly   355 GGSRATRVSRDSVNSCGTNSERSAALDPESLNSGQLGPVPASPSSQPLRQGNGHGHGGNHGHVHS 419
            ||........|.....|.....|     :.||......||     .|:|..:|.         .|
Zfish    59 GGVSVKSDEEDDRFPIGIREAVS-----QVLNGYDWTLVP-----MPVRVNSGS---------KS 104

  Fly   420 KPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKLHM 484
            |||:|||||||||||:..|||:....|.:||:.:||.||..|:.::..||:|:.||..||.|.|.
Zfish   105 KPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFIEEAERLRKQHK 169

  Fly   485 EQHPDYRYRPRPKRTCIVDGKKMRISEYKVLMRNRRAEMRQLWCRTGGVSGGSGSLCADACPKGS 549
            :.:|:|:|:||.::    :||....||                              |||..:|.
Zfish   170 KDYPEYKYQPRRRK----NGKPGSSSE------------------------------ADAHSEGE 200

  Fly   550 GGSNSQVAVAAAAAVYHLQDMASSAASTA-----HGHDCG--HTPPQQFFYPP 595
             .|:||....:    .||:.....||.:.     |.|..|  |:||.    ||
Zfish   201 -VSHSQSHYKS----LHLEVAHGGAAGSPLGDGHHPHATGQSHSPPT----PP 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 SOX-TCF_HMG-box 422..493 CDD:238684 34/70 (49%)
sox10NP_571950.1 Sox_N 13..97 CDD:289229 22/100 (22%)
SOX-TCF_HMG-box 107..177 CDD:238684 34/69 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582356
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0527
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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