DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox102F and sox18

DIOPT Version :10

Sequence 1:NP_001014695.1 Gene:Sox102F / 43844 FlyBaseID:FBgn0039938 Length:618 Species:Drosophila melanogaster
Sequence 2:NP_001123409.1 Gene:sox18 / 100170185 XenbaseID:XB-GENE-483233 Length:362 Species:Xenopus tropicalis


Alignment Length:262 Identity:92/262 - (35%)
Similarity:129/262 - (49%) Gaps:39/262 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 RDSVNSC-GTNSERSAALD--PESLNSGQLGPVPAS--PSSQPLRQGNGHGHG------GNHGHV 417
            |:....| |.||......|  ||:..:....|.|.|  ||.||     |:|:.      |:    
 Frog    10 REEPTPCQGVNSTWVPPADTVPETSPTPSSPPAPDSPTPSPQP-----GYGYSPCEEKPGD---- 65

  Fly   418 HSKPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNADKQPYYEEQSRLSKL 482
               |.|:||||||||||||||:::.:..||:||:.:||:||..||.:|:|:|:|:.||..||...
 Frog    66 ---PRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQSWKNLSSAEKRPFVEEAERLRVQ 127

  Fly   483 HMEQHPDYRYRPRPKRTCIVDGKKMRISEYKVLMRN---RRAEMRQL-WCRTGGVSGGSGSLCAD 543
            |::.||:|:||||.|:    ..||::..:...|:||   |...|..| ..|.....||||.|.:.
 Frog   128 HLQDHPNYKYRPRRKK----QAKKLKRVDPSPLLRNEGYRGQAMANLSHFRDLHPLGGSGDLESY 188

  Fly   544 ACPKGSGGSNSQVAVAAAAAVY--HLQDMASSA--ASTAHGHDCGHTPPQQFFYPPESLSPS--- 601
            ..|... .|...|...:..|.:  |:::.|...  .:..||.|.|.....:....|.|.|||   
 Frog   189 GLPTPE-MSPLDVVEPSEPAFFPPHMREEADPGPFRTYQHGVDFGQEKTLREISLPYSSSPSHMG 252

  Fly   602 GF 603
            ||
 Frog   253 GF 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox102FNP_001014695.1 HMG-box_EGL13-like 421..498 CDD:438848 42/76 (55%)
sox18NP_001123409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..68 19/69 (28%)
HMG-box_SoxF_SOX18 65..144 CDD:438851 43/89 (48%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 70..83 12/12 (100%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 94..106 6/11 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 129..159 11/33 (33%)
Important for transcriptional activation. /evidence=ECO:0000250|UniProtKB:P43680 149..209 16/60 (27%)
Sox17_18_mid 173..222 CDD:463454 12/49 (24%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P35713 307..315
Blue background indicates that the domain is not in the aligned region.

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