DRSC/TRiP Functional Genomics Resources

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Protein Alignment fd102C and Foxa1

DIOPT Version :10

Sequence 1:NP_651951.1 Gene:fd102C / 43843 FlyBaseID:FBgn0039937 Length:599 Species:Drosophila melanogaster
Sequence 2:NP_032285.2 Gene:Foxa1 / 15375 MGIID:1347472 Length:468 Species:Mus musculus


Alignment Length:346 Identity:99/346 - (28%)
Similarity:143/346 - (41%) Gaps:54/346 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ADQDQGTSSRDSNVPKPSLPNIYPLGTTRTSQAQSTT--MTLEQYRLQLYNYALNIERLRCPQYG 76
            ||..:..||...:.....|.::..:.|..|....:|:  ||...:.:...|..|..........|
Mouse    20 ADTQEAYSSVPVSNMNSGLGSMNSMNTYMTMNTMTTSGNMTPASFNMSYANTGLGAGLSPGAVAG 84

  Fly    77 GTGGS----------GASAPWLHLSPYGHHGSGSLP--SVNRMA--------ALSTISLFPQT-- 119
            ..|.|          |.:|....|||.|....|:.|  |:|.:.        .:|.::..|..  
Mouse    85 MPGASAGAMNSMTAAGVTAMGTALSPGGMGSMGAQPATSMNGLGPYAAAMNPCMSPMAYAPSNLG 149

  Fly   120 ---------QRIFQPEEP--KPQHSYIGLIAMAILSSTDMKLVLSDIYQYILDNYPYFRSRGPGW 173
                     .:.|:...|  ||.:|||.||.|||..:....|.||:|||:|:|.:||:|.....|
Mouse   150 RSRAGGGGDAKTFKRSYPHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRW 214

  Fly   174 RNSIRHNLSLNDCFIKSGRSAN--GKGHYWAIHPANMEDFRKGDFRRRKAQRKVRKHMGLSVDDA 236
            :|||||:||.||||:|..||.:  |||.||.:||.:...|..|.:.||:.:.|..|..|......
Mouse   215 QNSIRHSLSFNDCFVKVARSPDKPGKGSYWTLHPDSGNMFENGCYLRRQKRFKCEKQPGAGGGSG 279

  Fly   237 STDSPSPPP--LDLTTPPPPSSQSALQLSALGYPYHQHYIGQFFNRSSAPGMTHYSPPDPALLMQ 299
            ...|...|.  .|.:.|..||::|         |.|:...|:......||.      |.||...|
Mouse   280 GGGSKGGPESRKDPSGPGNPSAES---------PLHRGVHGKASQLEGAPA------PGPAASPQ 329

  Fly   300 RQEANNLDQTIQPTQLQQPHS 320
            ..:.:....|...::|:.|.|
Mouse   330 TLDHSGATATGGASELKSPAS 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fd102CNP_651951.1 FH_FOXQ2-like 129..223 CDD:410809 47/95 (49%)
Foxa1NP_032285.2 Forkhead_N 17..169 CDD:369872 29/148 (20%)
FH_FOXA1 157..268 CDD:410812 49/110 (45%)
Essential for DNA binding 251..288 8/36 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 269..396 22/97 (23%)
HNF_C 393..457 CDD:430552
Blue background indicates that the domain is not in the aligned region.

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