DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mGluR and grm2a

DIOPT Version :10

Sequence 1:NP_524639.2 Gene:mGluR / 43838 FlyBaseID:FBgn0019985 Length:976 Species:Drosophila melanogaster
Sequence 2:XP_005166174.1 Gene:grm2a / 336153 ZFINID:ZDB-GENE-030131-8097 Length:894 Species:Danio rerio


Alignment Length:923 Identity:433/923 - (46%)
Similarity:565/923 - (61%) Gaps:105/923 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NTHTQDSVSVSLPGDIILGGLFPVHEKGEGA-PCGPKVYNRGVQRLEAMLYAIDRVNNDPNILPG 93
            ||.|... .:.:.||:::|||||||.||||| .||.....||:|||||||.|:|::|.|..||||
Zfish    46 NTDTSKK-EIVMDGDLVIGGLFPVHHKGEGAQDCGRINTQRGIQRLEAMLLALDKINQDDQILPG 109

  Fly    94 ITIGVHILDTCSRDTYALNQSLQFVRASLNNLDTSGYECADGS------SPQLRKNASSGPVFGV 152
            :|:|.|||||||:|||||.|||:||||||..:|.|.|.|.|||      .|.        .:.||
Zfish   110 VTLGAHILDTCSKDTYALEQSLEFVRASLTKVDDSEYTCPDGSYAIHDDVPL--------AISGV 166

  Fly   153 IGGSYSSVSLQVANLLRLFHIPQVSPASTAKTLSDKTRFDLFARTVPPDTFQSVALVDILKNFNW 217
            ||||||.||:|||||||||.|||:|.|||:..||||:|:|.||||||||.:|:.|:.:||:.|||
Zfish   167 IGGSYSDVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNW 231

  Fly   218 SYVSTIHSEGSYGEYGIEALHKEATERNVCIAVAEKVPSAADDKVFDSIISKLQKKPNARGVVLF 282
            :||||:.|||.|||.||:|..:||....:|||.:.||..:.|...:|.:|..|.:|.||:.|:||
Zfish   232 TYVSTVASEGDYGETGIDAFQQEARALQICIATSAKVSRSMDQYSYDGVIRSLLQKSNAKVVILF 296

  Fly   283 TRAEDARRILQAAKRANLSQPFHWIASDGWGKQQKLLEGLEDIAEGAITVELQSEIIADFDRYMM 347
            ||:||||.:|.||||.|:|  |.|:||||||.|:.::.|.|.:|:||.|:||.|..|.:|..|..
Zfish   297 TRSEDARELLVAAKRMNVS--FIWVASDGWGAQEVVVRGSESVADGAFTIELASYTIPEFAAYFT 359

  Fly   348 QLTPETNQRNPWFAEYWEDTFNCVLTSLSVKPDTSNSANSTDNKIGVKAKTECDDSYRLSEKVGY 412
            .|.|..|.|||||.|:||:.|.|.|..:     |....:..|.|                    :
Zfish   360 NLNPYNNTRNPWFREFWENKFQCSLHDI-----TCGKHSLRDGK--------------------F 399

  Fly   413 EQESKTQFVVDAVYAFAYALHNLHNDRCNTQSDQTTETRKHLQSESVWYRKISTDTKSQACPDMA 477
            |||||..|||:||||.|.|||::....|                        :..||  .|..|.
Zfish   400 EQESKIMFVVNAVYAMANALHHMRQALC------------------------ANSTK--LCSAMK 438

  Fly   478 NYDGKEFYNNYLLNVSF------IDLAGSEVKFDRQGDGLARYDILNYQRQENSSGYQYKVIGKW 536
            ..:||..|.:|:|...|      .| ..:.:.||..||.|.||:|.:|.::.:.  |.|:.:|.|
Zfish   439 PVNGKRLYKDYILKTKFDAPFRPAD-TDNIIHFDAYGDSLGRYNIFHYHKENDE--YVYRKVGYW 500

  Fly   537 FNGLQLNSETVVWNKETEQPTSACSLPCEVGMIKKQQ-GDTCCWICDSCESFEYVYDEFTCKDCG 600
            ...|.||:..:.|..:. .|||.||.||....||..| ||.|||||..|:.::|:.|||||.||.
Zfish   501 AQDLTLNTTLIPWESQA-VPTSQCSDPCRKNEIKSMQPGDVCCWICIPCQPYQYLLDEFTCADCS 564

  Fly   601 PGLWPYADKLSCYALDIQYMKWNSLFALIPMAIAIFGIALTSIVIVLFAKNHDTPLVRASGRELS 665
            .|.||..:...||.|..:|:.|...:|:.|::||..|:..|..||.||.||::||:|:|||||||
Zfish   565 FGQWPLDNLTGCYDLPEEYIHWEDAWAIGPVSIACLGMLCTLFVIGLFLKNNETPVVKASGRELS 629

  Fly   666 YTLLFGILVCYCNTFALIAKPTIGSCVLQRFGIGVGFSIIYSALLTKTNRISRIFHSASKSAQRL 730
            |.||.|:|:||..||..|:||:...|.|:|.|:|..|::.|||||||||||:|||:.....|||.
Zfish   630 YILLLGVLLCYFMTFIYISKPSAVVCTLRRLGLGTSFAVCYSALLTKTNRIARIFNGVKDGAQRP 694

  Fly   731 KYISPQSQVVITTSLIAIQVLITMIWMVVEPPGTR-FYYPDRREVI-LKCKIQDMSFLFSQLYNM 793
            ::|||.|||.|..:||:.|:|:.::|::||.||.| ...|:||:|: |||..:|.|.|.|..||.
Zfish   695 RFISPASQVAICAALISCQLLVVVVWLLVEAPGVRKEVSPERRDVVTLKCNSKDSSMLMSLTYNC 759

  Fly   794 ILITICTIYAIKTRKIPENFNESKFIGFTMYTTCIIWLAFVPIYFGTGNSYEVQTTTLCISISLS 858
            :||.:||.||.||||.||||||:|||||||||||||||||.||::.|.:.|.|||||:|||:|||
Zfish   760 VLIILCTFYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFQPIFYVTASDYRVQTTTMCISVSLS 824

  Fly   859 ASVALVCLYSPKVYILVFHPDKNVRKLTMNSTVYRRSAAAVAQGAPTSSGYSRTHAPGTSALTGG 923
            .||.|.||::||::|::|.|.|||..|.:.:|                 .:|.|..||:|.....
Zfish   825 GSVVLGCLFAPKIHIILFQPQKNVTTLRVATT-----------------RFSVTTGPGSSFSQAS 872

  Fly   924 AVGTNASSSTLPT 936
            |      |:.:||
Zfish   873 A------SNIVPT 879

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mGluRNP_524639.2 PBP1_mGluR_groupII 39..542 CDD:380598 234/515 (45%)
NCD3G 556..605 CDD:462210 27/49 (55%)
7tmC_mGluRs_group2_3 625..876 CDD:320600 143/252 (57%)
TM helix 1 625..650 CDD:320600 10/24 (42%)
TM helix 2 662..683 CDD:320600 13/20 (65%)
TM helix 3 692..716 CDD:320600 14/23 (61%)
TM helix 4 738..758 CDD:320600 8/19 (42%)
TM helix 5 781..807 CDD:320600 13/25 (52%)
TM helix 6 815..838 CDD:320600 20/22 (91%)
TM helix 7 845..870 CDD:320600 16/24 (67%)
grm2aXP_005166174.1 Periplasmic_Binding_Protein_type1 54..506 CDD:471960 234/515 (45%)
NCD3G 519..569 CDD:462210 27/49 (55%)
7tm_GPCRs 589..842 CDD:475119 143/252 (57%)
TM helix 1 590..614 CDD:410628 10/23 (43%)
TM helix 2 626..647 CDD:410628 13/20 (65%)
TM helix 3 656..678 CDD:410628 12/21 (57%)
TM helix 4 704..720 CDD:410628 5/15 (33%)
TM helix 5 747..770 CDD:410628 11/22 (50%)
TM helix 6 782..804 CDD:410628 19/21 (90%)
TM helix 7 811..836 CDD:410628 16/24 (67%)

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