DRSC/TRiP Functional Genomics Resources

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Protein Alignment mGluR and Grm1

DIOPT Version :9

Sequence 1:NP_001259076.1 Gene:mGluR / 43838 FlyBaseID:FBgn0019985 Length:976 Species:Drosophila melanogaster
Sequence 2:NP_058707.2 Gene:Grm1 / 24414 RGDID:2742 Length:1199 Species:Rattus norvegicus


Alignment Length:945 Identity:364/945 - (38%)
Similarity:543/945 - (57%) Gaps:79/945 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TQDSVSVSLPGDIILGGLFPVH-----EKGEGAPCGPKVYNRGVQRLEAMLYAIDRVNNDPNILP 92
            :|.||: .:.||:|:|.||.||     ||.....||......|:||:|||.:.:|::|.||.:||
  Rat    34 SQRSVA-RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLP 97

  Fly    93 GITIGVHILDTCSRDTYALNQSLQFVRASLNNL--DTSGY-EC-ADGSSPQLRKNASSGPVFGVI 153
            .||:|..|.|:|...:.||.||::|:|.||.::  :..|. .| .||.:  |....:..|:.|||
  Rat    98 NITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRCLPDGQT--LPPGRTKKPIAGVI 160

  Fly   154 GGSYSSVSLQVANLLRLFHIPQVSPASTAKTLSDKTRFDLFARTVPPDTFQSVALVDILKNFNWS 218
            |...|||::||.|||:||.|||::.::|:..|||||.:..|.|.||.||.|:.|::||:|.:||:
  Rat   161 GPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWT 225

  Fly   219 YVSTIHSEGSYGEYGIEALHKEATERNVCIAVAEKVPSAADDKVFDSIISKLQKK-PNARGVVLF 282
            |||.:|:||:|||.|::|..:.|.:..:|||.::|:.|.|.:|.||.::.||::: |.||.||.|
  Rat   226 YVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCF 290

  Fly   283 TRAEDARRILQAAKRANLSQPFHWIASDGWGKQQKLLEGLEDIAEGAITVELQSEIIADFDRYMM 347
            ......|.:|.|.:|..:...|..|.||||..:.:::||.|..|.|.||::|||..:..||.|.:
  Rat   291 CEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFL 355

  Fly   348 QLTPETNQRNPWFAEYWEDTFNCVLTS-LSVKPDTSNSANSTDNKIGVKAKTECDDSYRLSEKVG 411
            :|..:||.|||||.|:|:..|.|.|.. |...|:               .|..|..:..|.|  .
  Rat   356 KLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPN---------------FKKVCTGNESLEE--N 403

  Fly   412 YEQESKTQFVVDAVYAFAYALHNLHNDRCNTQSDQTTETRKHLQSESVWYRKISTDTKSQACPDM 476
            |.|:||..||::|:||.|:.|.|:|:..|          ..|:                ..|..|
  Rat   404 YVQDSKMGFVINAIYAMAHGLQNMHHALC----------PGHV----------------GLCDAM 442

  Fly   477 ANYDGKEFYNNYLLNVSFIDLAGSEVKFDRQGDGLARYDILNYQRQENSSGYQYKVIGKWFNG-L 540
            ...||::.. ::|:..||:.::|.||.||.:||...||||:|.|..| ::.|.|..:|.|..| |
  Rat   443 KPIDGRKLL-DFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTE-ANRYDYVHVGTWHEGVL 505

  Fly   541 QLNSETVVWNKETEQPTSACSLPCEVGMIKK-QQGD-TCCWICDSCESFEYVYDEFTCKDCGPGL 603
            .::...:..|| :....|.||.||..|.||. ::|: :|||||.:|:..|:|.|||||:.|..|.
  Rat   506 NIDDYKIQMNK-SGMVRSVCSEPCLKGQIKVIRKGEVSCCWICTACKENEFVQDEFTCRACDLGW 569

  Fly   604 WPYADKLSCYALDIQYMKWNSLFALIPMAIAIFGIALTSIVIVLFAKNHDTPLVRASGRELSYTL 668
            ||.|:...|..:.::|::|:.:.::|.:|.:..||.:|..|.::|....|||:|::|.|||.|.:
  Rat   570 WPNAELTGCEPIPVRYLEWSDIESIIAIAFSCLGILVTLFVTLIFVLYRDTPVVKSSSRELCYII 634

  Fly   669 LFGILVCYCNTFALIAKPTIGSCVLQRFGIGVGFSIIYSALLTKTNRISRIFHSASKS--AQRLK 731
            |.||.:.|...|.||||||..||.|||..:|:..::.||||:||||||:||...:.|.  .::.:
  Rat   635 LAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKPR 699

  Fly   732 YISPQSQVVITTSLIAIQVLITMIWMVVEPPGTRFYYPDRREVILKCKIQDMSFLFSQLYNMILI 796
            ::|..:||:|.:.||::|:.:.:..:::|||.....||..:||.|.|...::..:....||.:||
  Rat   700 FMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEVYLICNTSNLGVVAPVGYNGLLI 764

  Fly   797 TICTIYAIKTRKIPENFNESKFIGFTMYTTCIIWLAFVPIYFGTGNSYEVQTTTLCISISLSASV 861
            ..||.||.|||.:|.||||:|:|.||||||||||||||||||  |::|::.||  |.::|||.:|
  Rat   765 MSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYF--GSNYKIITT--CFAVSLSVTV 825

  Fly   862 ALVCLYSPKVYILVFHPDKNVRKLTMNSTVYRRSAAAVAQG-----APTSSGYSRTHAPGTSALT 921
            ||.|:::||:||::..|::|||.....|.|.|..   |..|     :.|.....|...||  |..
  Rat   826 ALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMH---VGDGKLPCRSNTFLNIFRRKKPG--AGN 885

  Fly   922 GGAVGTNASSSTLPTQNSPHLDEASAQTNVAHKTN 956
            ..:.|.:.|.|....:.:|.......:.:|..|||
  Rat   886 ANSNGKSVSWSEPGGRQAPKGQHVWQRLSVHVKTN 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mGluRNP_001259076.1 Periplasmic_Binding_Protein_Type_1 43..542 CDD:299141 193/510 (38%)
ANF_receptor 72..518 CDD:279440 171/451 (38%)
NCD3G 557..604 CDD:284890 24/48 (50%)
7tm_3 638..873 CDD:278433 109/236 (46%)
Grm1NP_058707.2 PBP1_mGluR_groupI 36..510 CDD:380597 195/521 (37%)
Glutamate binding 186..188 0/1 (0%)
NCD3G 521..571 CDD:400103 24/49 (49%)
7tmC_mGluR1 591..840 CDD:320565 114/252 (45%)
TM helix 1 592..616 CDD:320565 7/23 (30%)
TM helix 2 628..649 CDD:320565 9/20 (45%)
TM helix 3 658..680 CDD:320565 10/21 (48%)
TM helix 4 708..724 CDD:320565 4/15 (27%)
TM helix 5 749..772 CDD:320565 7/22 (32%)
TM helix 6 784..806 CDD:320565 18/21 (86%)
TM helix 7 809..834 CDD:320565 11/26 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 882..905 5/24 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 959..1036
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1056..1081
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1120..1177
GluR_Homer-bdg 1150..1199 CDD:402304
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3B9DN
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG49358
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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