DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mGluR and grm3

DIOPT Version :10

Sequence 1:NP_524639.2 Gene:mGluR / 43838 FlyBaseID:FBgn0019985 Length:976 Species:Drosophila melanogaster
Sequence 2:XP_031754896.1 Gene:grm3 / 100492610 XenbaseID:XB-GENE-977445 Length:878 Species:Xenopus tropicalis


Alignment Length:944 Identity:457/944 - (48%)
Similarity:603/944 - (63%) Gaps:89/944 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TILVVVMVLSWSRVVDLKSPSNTHTQDSVSVSLPGDIILGGLFPVHEKGEGA-PCGPKVYNRGVQ 72
            |.|.|:::..:|:.|.|.  |:.|......:...||::||||||::|||.|. .||....:||:|
 Frog     3 TSLQVLLLALFSKAVLLS--SSDHNFVRKEIKFEGDLVLGGLFPINEKGGGMDECGRINEDRGIQ 65

  Fly    73 RLEAMLYAIDRVNNDPNILPGITIGVHILDTCSRDTYALNQSLQFVRASLNNLDTSGYECADGSS 137
            ||||||:|||::|.|.::|||:.:|||||||||||||||.|||:||||||..:|.:.|.|.|||.
 Frog    66 RLEAMLFAIDQINRDSSLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDGSY 130

  Fly   138 PQLRKNASSGPVFGVIGGSYSSVSLQVANLLRLFHIPQVSPASTAKTLSDKTRFDLFARTVPPDT 202
             .:::| |..|:.|||||||||||:|||||||||||||:|.|||:..||||:|:|.||||||||.
 Frog   131 -AIQEN-SPLPIAGVIGGSYSSVSIQVANLLRLFHIPQISYASTSAKLSDKSRYDYFARTVPPDF 193

  Fly   203 FQSVALVDILKNFNWSYVSTIHSEGSYGEYGIEALHKEATERNVCIAVAEKVPSAADDKVFDSII 267
            :|:.|:.:||:.|||:||||:.|||.|||.||||...||..||:|||.:|||..:...|.:|:.|
 Frog   194 YQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEHEARLRNICIATSEKVGRSNLKKSYDNAI 258

  Fly   268 SKLQKKPNARGVVLFTRAEDARRILQAAKRANLSQPFHWIASDGWGKQQKLLEGLEDIAEGAITV 332
            .:|.:||||:.||||.|::|.|.:|.||.|.|.|  |.||||||||.|:.:::|.|.||.||||:
 Frog   259 KELLQKPNAKVVVLFMRSDDTRELLAAANRFNAS--FTWIASDGWGAQESIVKGNEHIAYGAITL 321

  Fly   333 ELQSEIIADFDRYMMQLTPETNQRNPWFAEYWEDTFNCVLTSLSVKPDTSNSANSTDNKIGVKAK 397
            ||.|..:.:||:|...|||..|.|||||.::|:..|.|.|      .:.:......|.::.:.:.
 Frog   322 ELASHPVKEFDKYFQSLTPYNNHRNPWFKDFWQQKFQCSL------QNKNQQVKFCDKRLNINSS 380

  Fly   398 TECDDSYRLSEKVGYEQESKTQFVVDAVYAFAYALHNLHNDRC-NTQSDQTTETRKHLQSESVWY 461
                         .||||||..||::||||.|||||.:....| ||                   
 Frog   381 -------------NYEQESKIMFVINAVYAMAYALHQMQRTVCPNT------------------- 413

  Fly   462 RKISTDTKSQACPDMANYDGKEFYNNYLLNVSFI------DLAGSEVKFDRQGDGLARYDILNYQ 520
                    :..|..|...|||:.|.:|||.|:|.      ....|.||||..|||:..|::.|: 
 Frog   414 --------NILCDAMKVLDGKKLYKDYLLKVNFTAPFIPPSNTDSIVKFDAYGDGIGLYNVFNF- 469

  Fly   521 RQENSSGYQYKVIGKWFNGLQLNSETVVWNKETEQPTSACSLPCEVGMIKKQQ-GDTCCWICDSC 584
             |.::..|.|..||:|...|.|:.:.:.|:|.. .|||.||.||....:|..| ||.|||||..|
 Frog   470 -QYHNGKYSYLKIGQWAETLSLDVDIIQWSKSL-VPTSQCSDPCAPNEMKNMQPGDVCCWICIPC 532

  Fly   585 ESFEYVYDEFTCKDCGPGLWPYADKLSCYALDIQYMKWNSLFALIPMAIAIFGIALTSIVIVLFA 649
            |.:||:.|||||.|||.|.||.||..||:.|...|:||...:|:.|:.||..|...|.:|..:|.
 Frog   533 EKYEYLADEFTCIDCGEGRWPTADLTSCFDLPEDYIKWEDAWAIGPVTIACLGFVCTCLVGGVFI 597

  Fly   650 KNHDTPLVRASGRELSYTLLFGILVCYCNTFALIAKPTIGSCVLQRFGIGVGFSIIYSALLTKTN 714
            ||:.||||:||||||.|.||.|:.:|||.||..||||:...|.|:|.|:|..|.:.|||||||||
 Frog   598 KNNSTPLVKASGRELCYILLIGVFMCYCMTFFFIAKPSPVICTLRRLGLGTSFVVCYSALLTKTN 662

  Fly   715 RISRIFHSASKSAQRLKYISPQSQVVITTSLIAIQVLITMIWMVVEPPGTRFY-YPDRRE-VILK 777
            ||:|||......|||.|:|||:|||||..|||::|:::..:|:::|.||||.| .|::|| ||||
 Frog   663 RIARIFSGVKDGAQRPKFISPKSQVVICLSLISVQIVVVSVWLMLEFPGTRRYTLPEKRETVILK 727

  Fly   778 CKIQDMSFLFSQLYNMILITICTIYAIKTRKIPENFNESKFIGFTMYTTCIIWLAFVPIYFGTGN 842
            |.::|.|.|.|..|:::|:.:||:||.||||.||||||:|||||||||||||||||:||::.|.:
 Frog   728 CNVKDSSMLISLTYDVVLVILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSS 792

  Fly   843 SYEVQTTTLCISISLSASVALVCLYSPKVYILVFHPDKNV--RKLTMN-------STVYRRSAAA 898
            .|.|||||:|||:|||..|.|.||::|||:|::|.|.|||  .:|.:|       :|.|.:|:| 
 Frog   793 DYRVQTTTMCISVSLSGFVVLGCLFAPKVHIILFQPQKNVVTHRLHLNRFSVSGTATTYSQSSA- 856

  Fly   899 VAQGAPTSSGYSRTHAPGTSALTGGAVGTNASSS 932
                   |:.|:.|      ...||.|..:.:||
 Frog   857 -------SAHYTPT------ICNGGEVLDSTTSS 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mGluRNP_524639.2 PBP1_mGluR_groupII 39..542 CDD:380598 244/510 (48%)
NCD3G 556..605 CDD:462210 29/49 (59%)
7tmC_mGluRs_group2_3 625..876 CDD:320600 144/252 (57%)
TM helix 1 625..650 CDD:320600 8/24 (33%)
TM helix 2 662..683 CDD:320600 12/20 (60%)
TM helix 3 692..716 CDD:320600 14/23 (61%)
TM helix 4 738..758 CDD:320600 9/19 (47%)
TM helix 5 781..807 CDD:320600 11/25 (44%)
TM helix 6 815..838 CDD:320600 20/22 (91%)
TM helix 7 845..870 CDD:320600 15/24 (63%)
grm3XP_031754896.1 PBP1_mGluR_groupII 31..492 CDD:380598 245/512 (48%)
NCD3G 503..553 CDD:462210 29/49 (59%)
7tmC_mGluR_group2 573..826 CDD:320411 144/252 (57%)
TM helix 1 573..598 CDD:320411 8/24 (33%)
TM helix 2 610..631 CDD:320411 12/20 (60%)
TM helix 3 640..664 CDD:320411 14/23 (61%)
TM helix 4 686..706 CDD:320411 9/19 (47%)
TM helix 5 731..757 CDD:320411 11/25 (44%)
TM helix 6 765..788 CDD:320411 20/22 (91%)
TM helix 7 795..820 CDD:320411 15/24 (63%)

Return to query results.
Submit another query.