DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and Rhox13

DIOPT Version :10

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001395833.1 Gene:Rhox13 / 691244 RGDID:1586264 Length:234 Species:Rattus norvegicus


Alignment Length:205 Identity:51/205 - (24%)
Similarity:81/205 - (39%) Gaps:61/205 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 TTAHLTLPPAASVVTSPANLSGQADRDDV-------------QKRELQFSVEVSHTNSHDSTSDG 243
            :|:.:....|.:|..:.|.....|.|..:             .|:|.:...|.|:.:..|...:|
  Rat    31 STSTMEASGAMAVAQAGAACRSHASRGTIGYDTVYEPNVKGDPKQESESDTEESYDDEDDDEDEG 95

  Fly   244 NSEHNSSGDEDSQ------------------------------MRLRLKRKLQRNRTS---FSNE 275
            :.:..|:.|:|:.                              .|.|.:|..:..|:|   |:..
  Rat    96 DEDDLSTSDQDTSDPEQEEAALFVAAAAPPIAPAAAAIQIPGPHRSRRRRHRRHRRSSPYLFTQW 160

  Fly   276 QIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSG 340
            |::.:|..||.|.||||..|..||..:.:||.:::|||||||||.|:.|:               
  Rat   161 QVEEMENLFEETPYPDVLTRGELARTLNVPEVKVKVWFSNRRAKQRKNER--------------- 210

  Fly   341 RTSTANNPSG 350
            |....|.|||
  Rat   211 RAMLRNMPSG 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 37/131 (28%)
Homeodomain 267..322 CDD:459649 26/57 (46%)
Rhox13NP_001395833.1 Homeodomain 157..207 CDD:459649 24/49 (49%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.