DRSC/TRiP Functional Genomics Resources

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Protein Alignment toy and shox

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_005167911.1 Gene:shox / 664748 ZFINID:ZDB-GENE-051030-21 Length:304 Species:Danio rerio


Alignment Length:108 Identity:49/108 - (45%)
Similarity:71/108 - (65%) Gaps:9/108 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 DVQKRELQFSVEVSHTNSHDSTSD--GNSEHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQIDSLE 281
            :::|.:|:   |.|.|.:.|...|  ...|...|.|||:|.:|    |.:|:||:|:.||::.||
Zfish    68 ELEKEKLK---EFSVTRASDGIYDCKDKKEDVKSEDEDAQSKL----KQRRSRTNFTLEQLNELE 125

  Fly   282 KEFERTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREE 324
            :.|:.|||||.|.||.|:.::||.|||:||||.|||||.|::|
Zfish   126 RLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQE 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 39/72 (54%)
Homeobox 269..322 CDD:395001 31/52 (60%)
shoxXP_005167911.1 Homeobox 112..165 CDD:278475 31/52 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.940

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