DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and SHOX2

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_003021.3 Gene:SHOX2 / 6474 HGNCID:10854 Length:355 Species:Homo sapiens


Alignment Length:353 Identity:84/353 - (23%)
Similarity:118/353 - (33%) Gaps:149/353 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 EHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQ 310
            :.::.|.||..   :.|.|.:|:||:|:.||::.||:.|:.|||||.|.||.|:.::||.|||:|
Human   148 KEDAKGMEDEG---QTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 209

  Fly   311 VWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANNPSGTTASSSVATSNNSTPGIVNSAINVA 375
            |||.|||||.|::|                                                   
Human   210 VWFQNRRAKCRKQE--------------------------------------------------- 223

  Fly   376 ERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSIPQPIATM 440
                     |.|.:.     ||.|.|:.......:|.:...|.|:|..                 
Human   224 ---------NQLHKG-----VLIGAASQFEACRVAPYVNVGALRMPFQ----------------- 257

  Fly   441 AENYNSSLGSMTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRNTACNPSAAHQQPPQHGVYTNSS 505
                ..|..::||...|        ....|.|.|....|||.        .|.....|..|. ..
Human   258 ----QDSHCNVTPLSFQ--------VQAQLQLDSAVAHAHHH--------LHPHLAAHAPYM-MF 301

  Fly   506 PMPSSNTGVISAGVSVPVQISTQNVSDLTGSNYWPRLQXSSIFGSPLDHLS--KATAAAIIAAQA 568
            |.|.                                      ||.||..|:  .|:||:::||.|
Human   302 PAPP--------------------------------------FGLPLATLAADSASAASVVAAAA 328

  Fly   569 AEKSHKHRKEHSIVSIHTTKRKKNPPSL 596
            |.|:..  |..||..:. .|.||:..:|
Human   329 AAKTTS--KNSSIADLR-LKAKKHAAAL 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 38/114 (33%)
Homeobox 269..322 CDD:395001 31/52 (60%)
SHOX2NP_003021.3 Homeobox 167..220 CDD:306543 31/52 (60%)
OAR 335..351 CDD:309087 6/16 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

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