DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and pax8

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_001339893.5 Gene:pax8 / 60637 ZFINID:ZDB-GENE-001030-3 Length:448 Species:Danio rerio


Alignment Length:576 Identity:179/576 - (31%)
Similarity:241/576 - (41%) Gaps:192/576 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKP 93
            ||.|:|||||::|||||||:..||:||::||.|.|||||||.|:||:||||||||||||||||||
Zfish     8 GHGGLNQLGGMFVNGRPLPEVIRQRIVDMAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKP 72

  Fly    94 RAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSINRVLRNLASQ 158
            ..||||||:|||..||:|||:|||:.|::||||||||||:|.||:.|.:||||||||::|.    
Zfish    73 GVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDGDTVPSVSSINRIIRT---- 133

  Fly   159 KEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNT---TTAHLTLPPAASVVTSPANLSGQADRDDV 220
            |.||.             ||        .|.:|   :..|..:|  :|.||.|.  |.|:|    
Zfish   134 KVQQP-------------FN--------LPLDTKGLSPGHTLIP--SSAVTPPE--SPQSD---- 169

  Fly   221 QKRELQFSVEVSHTNS-------HDSTSDGNSEHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQID 278
                     .:..|.|       ..:|:||...|:.|..|..:                  ..:|
Zfish   170 ---------SLGSTYSINGLLGITQTTADGKRGHDDSDQESCR------------------HSVD 207

  Fly   279 S------LEKEFERTHYPDV-----FARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRS 332
            |      ..|:....|:|..     |.|...:|.....:|..|::            .:......
Zfish   208 SQGSGGGARKQLRTEHFPSAALDCGFERHYSSDSFSQSKAEQQLY------------PLALMNPG 260

  Fly   333 ADTVDGSGRTSTANNPSGTTASSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVL 397
            .|  :|.|.:|.:.|   ..|....|        :|..|:..........||..:...|..|.::
Zfish   261 LD--EGKGASSISRN---LAAHQGYA--------VVTEALQPLPLCLKQEVSPEVNSLSPSPHII 312

  Fly   398 GGEANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSIPQPIATMAENYNSSLGSMTPSCLQQRDAY 462
            .|.|....::..||...|.|                            ||.||            
Zfish   313 SGSAFLDLSAISSPSSAPVA----------------------------SSCGS------------ 337

  Fly   463 PYMFHDPLSLGSPYVSAHHRNTACNPSAAHQQPPQHGVYTNSSPM-----------------PSS 510
            .::.|...|.      :||             .|.||.:::.|.|                 |::
Zfish   338 AHLSHGFSSF------SHH-------------APVHGQFSSPSLMAGREVASSMLPGYPPHIPTA 383

  Fly   511 NTG----VISAGVSVPVQISTQNVSDLTGSNY---WPRLQXSSIFGSPLDHLSKAT 559
            .||    .|:..||.| :.:.|:.|....|:|   | |.. |||.|||. :.|.||
Zfish   384 QTGFSSSTIAGMVSAP-EYTGQSYSHPAYSSYSEAW-RFTNSSILGSPY-YYSSAT 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 90/123 (73%)
COG5576 <253..368 CDD:227863 18/125 (14%)
Homeobox 269..322 CDD:395001 10/63 (16%)
pax8XP_001339893.5 PAX 8..132 CDD:128645 90/123 (73%)
Pax2_C 343..437 CDD:289189 30/116 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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