DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and Sebox

DIOPT Version :10

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_076441.1 Gene:Sebox / 58922 RGDID:62077 Length:188 Species:Rattus norvegicus


Alignment Length:198 Identity:55/198 - (27%)
Similarity:82/198 - (41%) Gaps:54/198 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 QRNRTSFSNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEK----- 325
            :|.||:||..|:..||:.|....|||:..||.||....||||:|||||.|||||..::.|     
  Rat    19 RRKRTTFSVGQLLELERVFAARPYPDISTREHLAQITHLPEAKIQVWFQNRRAKRIKDRKPGALN 83

  Fly   326 ----MRTQRRSADTVDGSGRTSTANNPSGTTASSSVATSNNSTPGIVNSAINVAERTSSALVSNS 386
                :.......||...|....|.::|..:|:|                    |::||:.....|
  Rat    84 ARLELPPNCSLPDTPQLSWDPGTPSHPLHSTSS--------------------AQQTSACPPQTS 128

  Fly   387 --LPEASNGPTVLGGEANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSIPQPIATMAENYNSSLG 449
              .|....|.:..|.:|.....:||.             ||.:::...:||          :|||
  Rat   129 CLAPILGPGQSWSGAKAAAPWGTSEV-------------SGVHSLEQIVPQ----------TSLG 170

  Fly   450 SMT 452
            :::
  Rat   171 NLS 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 38/110 (35%)
Homeodomain 267..322 CDD:459649 30/54 (56%)
SeboxNP_076441.1 COG5576 <13..121 CDD:227863 39/121 (32%)
Homeodomain 19..72 CDD:459649 28/52 (54%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 80..125 10/64 (16%)
Blue background indicates that the domain is not in the aligned region.

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