DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and Pdlim5

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_006501801.1 Gene:Pdlim5 / 56376 MGIID:1927489 Length:734 Species:Mus musculus


Alignment Length:583 Identity:109/583 - (18%)
Similarity:185/583 - (31%) Gaps:168/583 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 PCDISRILQVSNGCVSKILGRYYETGSIKPRAIGG-SKPRV--------ATTPVVQKIADYKREC 119
            |.::.:.:.:::..|||:........:..||..|. |.|:|        |.||.....:.:....
Mouse   100 PKEVVKPVPITSPAVSKVTSTTNMAYNKAPRPFGSVSSPKVTSIPSPSSAFTPAHAATSSHASPT 164

  Fly   120 PSIFAWEIR--------DRLLSEQVCNSD--------NIPSVSSINRVLRNLASQKEQQAQQQNE 168
            |...|..:.        ...||...|:|.        |:|...::..|....|   ::.|:.|..
Mouse   165 PVAAATPLHLSASGLHVSANLSADQCSSPPNTGKPAVNVPRQPTVTSVCSESA---QELAEGQRR 226

  Fly   169 SVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPANLSGQADRDDVQKRELQFSVEVSH 233
            .....::..||..|        |.......||...:|.............|..|:.|....|...
Mouse   227 GSQGDIKQQNGNPG--------TVKIPPKRPPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWR 283

  Fly   234 TNSHDSTSDG--------NSEHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYP 290
            ..:..:.|..        .:||.:..:.|:..:.:.               ..|||...:...:|
Mouse   284 PRTGTTQSRSFRILAQITGTEHLTESENDNTKKAKF---------------YSSLEDPLKNGPHP 333

  Fly   291 DVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANNP--SGTTA 353
            ....:        |.:...||...::.|     ....:..||..||:|: .....|.|  |..|.
Mouse   334 PAAPQ--------LLKVHSQVAIVSKEA-----ATYSSVSRSTRTVEGA-LEGFGNFPAFSPPTR 384

  Fly   354 SSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESPPLQPAAP 418
            .|:|..|            :.|...|:||.:.         |.|.|..|       |..|..|  
Mouse   385 YSAVVVS------------DAAATVSAALAAK---------TRLFGPEN-------SQSLLDA-- 419

  Fly   419 RLPLNSGFNTMYSSIPQPIATMAENYNSSLGSMTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRN 483
                     ...|::|:|:|.              ||||..:.         |.||.:|      
Mouse   420 ---------LCISTVPKPLAL--------------SCLQSSEE---------SSGSVHV------ 446

  Fly   484 TACNPSAAHQQPPQHGVYTNSSPMPSSNTGVISAGVSVPVQISTQNV-------SDLTGSNYWPR 541
               ..|::.|:|.|....:.:||: |::.|..|.|.|.|.....::.       |....|..|.|
Mouse   447 ---KKSSSTQEPSQQPASSGASPL-SASEGPESPGSSRPSVAGLRSAAAFKPVGSTSVKSPSWQR 507

  Fly   542 LQXSSIFGSPLDH--LSKATAAAIIAAQAAEKSHKHRKEHSIVSIHTTKRKKNPPSLKRQTTC 602
            .. ::.....:.:  .|..|.|::...|.::       :.::|     :|.::.|:.||...|
Mouse   508 PNQAAPSTGRISNNARSSGTGASVGPPQPSD-------QDTLV-----QRAEHIPAGKRTPMC 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 22/113 (19%)
COG5576 <253..368 CDD:227863 21/116 (18%)
Homeobox 269..322 CDD:395001 8/52 (15%)
Pdlim5XP_006501801.1 PDZ_signaling 10..82 CDD:238492
PHA03307 150..>540 CDD:223039 92/508 (18%)
DUF4749 214..315 CDD:374237 18/111 (16%)
LIM1_ENH 558..609 CDD:188837 1/1 (100%)
LIM2_ENH 617..668 CDD:188841
LIM3_ENH 676..730 CDD:188843
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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