DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and pax4

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001232009.2 Gene:pax4 / 561564 ZFINID:ZDB-GENE-041210-244 Length:360 Species:Danio rerio


Alignment Length:447 Identity:141/447 - (31%)
Similarity:196/447 - (43%) Gaps:133/447 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 AGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIK 92
            :|...:||||||::||||||...|:.::|||..|.|||:|||||:||||||||||||:..||:|.
Zfish    14 SGEGSVNQLGGVFLNGRPLPVYKRRLMIELATEGMRPCEISRILKVSNGCVSKILGRFQRTGAIG 78

  Fly    93 PRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSINRVLRNLAS 157
            |:|:|||:||:.|..|:..|..:||:.|::||||||.:|.:|:.|..|.:||||||||:|:.:  
Zfish    79 PKAVGGSRPRLLTPEVISIIVQHKRQNPTLFAWEIRQKLATERACRGDQVPSVSSINRILKKI-- 141

  Fly   158 QKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPANLSGQADRDDVQK 222
            .::......||..|.                    |.||                      :|| 
Zfish   142 HQDVDIAYPNEKHYH--------------------TEHL----------------------NVQ- 163

  Fly   223 RELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFERT 287
                     ||.                   ..||...|:|...|:||:|:.:|...|||||...
Zfish   164 ---------SHF-------------------QQQMNTNLRRTAHRSRTAFTADQSGRLEKEFTCG 200

  Fly   288 HYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANNPSGTT 352
            .|||:..||:||::..|.:..|:||||||||:.|||.|..                  :|..|..
Zfish   201 LYPDLLTREKLAEETNLSQDTIKVWFSNRRARMRRERKFE------------------HNDCGIA 247

  Fly   353 ASSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESPPLQPAA 417
            ....:....|                  ||:|.|         ...|.:...:.:..:|...|.|
Zfish   248 RRGFLGNCRN------------------ALISLS---------STAGCSLDDYRAHHAPSAFPLA 285

  Fly   418 PRLPLNSGFNTMYSSIPQPIATMAENYNSSLG-----SMTPSCLQQRDAYPYMFHDP 469
            .:...|:          .|:|.:..|..||..     |:.|.|....:|..|....|
Zfish   286 AQRDRNT----------FPLAHLNSNALSSCSFDQTESLMPMCHHGNEALAYRLVSP 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 72/123 (59%)
COG5576 <253..368 CDD:227863 38/114 (33%)
Homeobox 269..322 CDD:395001 26/52 (50%)
pax4NP_001232009.2 PAX 15..139 CDD:128645 72/123 (59%)
HOX 180..228 CDD:197696 22/47 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 1 1.000 - - FOG0002521
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.