DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and repo

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:674 Identity:151/674 - (22%)
Similarity:231/674 - (34%) Gaps:185/674 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GHPHSSVGQSTLFGCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSN 75
            |.|.:.:|...|...:||.|..:  ||.|:    .|....:|:     ....|..|.:.||....
  Fly    16 GGPLNPLGAKPLMPTTTAMHPVM--LGSVH----ELCSQQQQQ-----QQQQRLPDCNTILPNGG 69

  Fly    76 GCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPS-IFAWEIRDRLLSEQVCNS 139
            |            |.......|||...|.....|.|:..|.   || .:.:....:.|.||....
  Fly    70 G------------GGAGSGGAGGSPNYVTKLDFVNKMGCYS---PSQKYEYISAPQKLVEQQQQQ 119

  Fly   140 DN----------IPSVSSINRVLRNLASQKEQQAQQQNESV-------------------YEKLR 175
            .:          .|..|....:|...:||::||.|||...:                   ||..:
  Fly   120 QHHHQHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQ 184

  Fly   176 -----------------------------MFNGQTGGWAWYPSNTTTAHL------TLPPAAS-- 203
                                         |.||.:.|......:...:.|      ..||::|  
  Fly   185 LQHLYGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSST 249

  Fly   204 VVTSPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLKRKLQRN 268
            ||....|.:|.|:........:|.:...:...:..:.....|.....||.:.     :|:|  :.
  Fly   250 VVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNG-----IKKK--KT 307

  Fly   269 RTSFSNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSA 333
            ||:|:..|::.||:.|||..||||||||.||.|:.|.|:|:||||.|||||||:.|..|.     
  Fly   308 RTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRK----- 367

  Fly   334 DTVDGSGRTSTANNPSGTTASSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLG 398
                 :|...|:..|:.|....::|....|.|           :|::.....|:           
  Fly   368 -----TGYIKTSTPPTATLNPGTLAPPFTSYP-----------QTTTVTPPGSM----------- 405

  Fly   399 GEANTTHTSSESP----P----LQPAAPRLPLNSGFNTMYSSIPQPIATMAENYNS----SLGSM 451
                .:.||.::|    |    |.|||......||....|....|........|.|    .:|:.
  Fly   406 ----DSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPMRHYEYGSPTRMEMGAT 466

  Fly   452 TPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRNTACNPSA--------AHQQPPQ-----HGVYTN 503
            |.|.....|       :.::.|..|.:|..:.......|        ||||..|     :|.|.:
  Fly   467 TGSVAGNGD-------ESVANGGSYQTAELQTAQQQQLADGTLVTVHAHQQQQQQQQQLNGKYLS 524

  Fly   504 SSPMP-------SSNTGV-ISAGVSVP-VQISTQN-VSDLTGSNYWPRLQXSSIFGSPLDHLSKA 558
            :....       .|..|: :|.|.|.. |:...|: |:..||.       .:|..|:..|.....
  Fly   525 AEEAKYVHLQCHQSGGGLELSPGASCHLVEAQGQHYVTTATGG-------AASAGGTSSDDNDSG 582

  Fly   559 TAAAIIAAQAAEKSHKHRKEHSIV 582
            ....:|.::...:..:.::..|.|
  Fly   583 GMQTVIKSEEVSQQQQQQQGQSYV 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 26/134 (19%)
COG5576 <253..368 CDD:227863 45/114 (39%)
Homeobox 269..322 CDD:395001 33/52 (63%)
repoNP_477026.1 Homeobox 313..360 CDD:278475 29/46 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
32.940

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