DRSC/TRiP Functional Genomics Resources

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Protein Alignment toy and pdlim7

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_957134.1 Gene:pdlim7 / 393813 ZFINID:ZDB-GENE-040426-2092 Length:419 Species:Danio rerio


Alignment Length:236 Identity:46/236 - (19%)
Similarity:75/236 - (31%) Gaps:87/236 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 PSGTTASSSVATSNNSTPGIVNSAINV----AERTSSALVSNSLPEASNGPTV--------LGGE 400
            |.|..|.:.|        |:.:..:::    ||..:.....|.:..|::...:        .|||
Zfish    35 PGGKAAQAGV--------GVGDWVVSIFDANAEEMTHVEAQNKIRAATDSLKLTLSRAFHPAGGE 91

  Fly   401 ANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSIPQPIATMAENYNSSLGS-------------MT 452
            ...:.|||.|.|....||...:|.               ||..:::|.||             :.
Zfish    92 QKDSLTSSSSQPKYSFAPSTAINK---------------MARPFSASPGSGSAGPVIKPVSYALK 141

  Fly   453 PSCLQQRDAY------------PYMFHD--------PLSLG----SPYVS------AHHRNTACN 487
            |:.....:.:            |...||        |:|.|    .|:|:      .:|.:.:..
Zfish   142 PALSSPHNGHGVAPCPVTVKSKPADKHDAVQAPAKAPVSSGPACRPPWVTDPGFADRYHPDKSST 206

  Fly   488 PSAAHQQPPQHGVYTNSSPMPSSN-TGVISAGVSVPVQIST 527
            ....|.||.|        |.|..| :.::.|....|...||
Zfish   207 VVTQHTQPLQ--------PTPMQNRSSILQAAQQSPAHSST 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645
COG5576 <253..368 CDD:227863 5/19 (26%)
Homeobox 269..322 CDD:395001
pdlim7NP_957134.1 PDZ_signaling 3..81 CDD:238492 9/53 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..232 14/65 (22%)
LIM1_Enigma 244..295 CDD:188836
LIM2_Enigma 303..354 CDD:188840
LIM3_Enigma 362..416 CDD:188842
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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