DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and gsb-n

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster


Alignment Length:591 Identity:175/591 - (29%)
Similarity:244/591 - (41%) Gaps:201/591 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKP 93
            |...:||||||::||||||:..|.||||:|.||.|||.|||.|:||:|||||||.||.|||||:|
  Fly    20 GQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 84

  Fly    94 RAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSINRVLRNLASQ 158
            ..||||||:|.:..:..:|.:.::|.||||:||||::|:.|...:.   ||.|||:|:||  .|.
  Fly    85 GVIGGSKPKVTSPEIETRIDELRKENPSIFSWEIREKLIKEGFADP---PSTSSISRLLR--GSD 144

  Fly   159 KEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPANLSGQADRDDVQKR 223
            :..:..:::.::       ||..||                                 ||.    
  Fly   145 RGSEDGRKDYTI-------NGILGG---------------------------------RDS---- 165

  Fly   224 ELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFERTH 288
                  ::|                   |.:|:..:.||||.:|:||:|:.||:::||:.|.||.
  Fly   166 ------DIS-------------------DTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSRTQ 205

  Fly   289 YPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANNPSGTTA 353
            ||||:.||.||....|.|||||||||||||:.|:.               ||.:::..:|..:.:
  Fly   206 YPDVYTREELAQTTALTEARIQVWFSNRRARLRKH---------------SGGSNSGLSPMNSGS 255

  Fly   354 SSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESPPLQPAAP 418
            |              |..:.|.       :|.:......||..:|..|.                
  Fly   256 S--------------NVGVGVG-------LSGATAPLGYGPLGVGSMAG---------------- 283

  Fly   419 RLPLNSGFNTMYSSIPQPIATMAENYNSSLGSMTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRN 483
                       ||..|...||.|               ...|...:..|.|        |:|| :
  Fly   284 -----------YSPAPGTTATGA---------------GMNDGVHHAAHAP--------SSHH-S 313

  Fly   484 TACNPSAAH-----------QQPPQHGVYTNSSPMPSSNTGVISAGVSVPVQISTQN-----VSD 532
            .|...:|||           |...|||               ...|.:.|....:||     .|.
  Fly   314 AATAAAAAHHHTQMGGYDLVQSAAQHG---------------FPGGFAQPGHFGSQNYYHQDYSK 363

  Fly   533 LTGSNYWPRLQXSSIFG-SPLDHL----SKATAA---AIIAAQAAEKSHKHRKEHSIVSIHTTKR 589
            ||..:: .:|. .|:.. ||..||    ||..|.   :..|..||...:.|..:|.:........
  Fly   364 LTIDDF-SKLTADSVSKISPSLHLSDNYSKLEAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAAA 427

  Fly   590 KKNPPS 595
            ..||.|
  Fly   428 HGNPAS 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 70/123 (57%)
COG5576 <253..368 CDD:227863 43/114 (38%)
Homeobox 269..322 CDD:395001 32/52 (62%)
gsb-nNP_523862.1 PAX 20..141 CDD:278709 70/123 (57%)
Homeobox 185..238 CDD:278475 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 1 0.900 - - E1_KOG0849
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.910

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