DRSC/TRiP Functional Genomics Resources

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Protein Alignment toy and pax6a

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_009296153.1 Gene:pax6a / 30567 ZFINID:ZDB-GENE-990415-200 Length:459 Species:Danio rerio


Alignment Length:562 Identity:276/562 - (49%)
Similarity:319/562 - (56%) Gaps:152/562 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SSVGQSTLFGCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQ------- 72
            :|:.|:.::.....||||:||||||:||||||||||||||||||||||||||||||||       
Zfish    17 ASMMQNKVYDICNEGHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKV 81

  Fly    73 -------VSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDR 130
                   |||||||||||||||||||:|||||||||||||..||.|||.||||||||||||||||
Zfish    82 QVLDNENVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDR 146

  Fly   131 LLSEQVCNSDNIPSVSSINRVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGW----AWYPSNT 191
            ||||.||.:||||||||||||||||||:|:|...   :.:||||||.|||||.|    .|||.  
Zfish   147 LLSEGVCTNDNIPSVSSINRVLRNLASEKQQMGA---DGMYEKLRMLNGQTGTWGTRPGWYPG-- 206

  Fly   192 TTAHLTLPPAASVVTSPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHN---SSGDE 253
                             .::.||.::|..|:                  |||..|:.   ||..|
Zfish   207 -----------------TSVPGQPNQDGCQQ------------------SDGGGENTNSISSNGE 236

  Fly   254 DS---QMRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVWFSN 315
            ||   ||||:||||||||||||:.|||::||||||||||||||||||||.||.||||||||||||
Zfish   237 DSDETQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 301

  Fly   316 RRAKWRREEKMRTQRRSADTVDGSGRTSTANNPSGTTASSSVATS------NNSTPGIVNSAINV 374
            ||||||||||:|.|||.|           :|:.|....|||.:||      ..:||         
Zfish   302 RRAKWRREEKLRNQRRQA-----------SNSSSHIPISSSFSTSVYQPIPQPTTP--------- 346

  Fly   375 AERTSSALVSNSLPEASNGPTVLGGEANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSIPQPIAT 439
            ...||.:::..|             :...|:|.|..||:                      |..|
Zfish   347 VSFTSGSMLGRS-------------DTALTNTYSALPPM----------------------PSFT 376

  Fly   440 MAENYNSSLGSMTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRNTACNPSAAHQQPPQHGVYTNS 504
            ||.|.     .|.||   |..:|..|...     ||.|:....:|        ..||....:.||
Zfish   377 MANNL-----PMQPS---QTSSYSCMLPT-----SPSVNGRSYDT--------YTPPHMQAHMNS 420

  Fly   505 SPMPSS---NTGVISAGVSVPVQISTQNVSDLTGSNYWPRLQ 543
            ..|.:|   :||:||.|||||||:..   |:...|.||||||
Zfish   421 QSMAASGTTSTGLISPGVSVPVQVPG---SEPDMSQYWPRLQ 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 113/137 (82%)
COG5576 <253..368 CDD:227863 80/123 (65%)
Homeobox 269..322 CDD:395001 46/52 (88%)
pax6aXP_009296153.1 PAX 31..169 CDD:128645 113/137 (82%)
Homeobox 255..307 CDD:306543 45/51 (88%)
Retinal 341..>459 CDD:330657 48/185 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6284
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1212
Inparanoid 1 1.050 422 1.000 Inparanoid score I1761
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 1 1.000 - - FOG0002521
OrthoInspector 1 1.000 - - otm25306
orthoMCL 1 0.900 - - OOG6_105713
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 1 1.000 - - X2218
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.000

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