DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and pax2a

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:XP_021336168.1 Gene:pax2a / 30425 ZFINID:ZDB-GENE-990415-8 Length:519 Species:Danio rerio


Alignment Length:557 Identity:178/557 - (31%)
Similarity:243/557 - (43%) Gaps:157/557 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 STAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG------- 83
            |..||.|:||||||:||||||||..||:||||||.|.|||||||.|:||:||||||||       
Zfish    16 SHIGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGSYQKDLI 80

  Fly    84 RYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSI 148
            ||||||||||..||||||:|||..||:|||:|||:.|::||||||||||:|.||::|.:||||||
Zfish    81 RYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 145

  Fly   149 NRVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPPAASVVTSPANLSG 213
            ||::|   ::.:|.....::.....|     .|.|.......:|...||...|.||.::.:....
Zfish   146 NRIIR---TKVQQPFHPSSDGTGTPL-----STAGHTIGDLESTPYTLTYSCALSVPSTASPPVS 202

  Fly   214 QADRDDVQKRELQFSVEVSHTNSHDSTSD-----GN----------SEHNSSGDEDSQMRLRLKR 263
            .|..|.|....:...:.:..:|......|     ||          ....|..:.|||..:...|
Zfish   203 SASNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYYGSDGSGPNSDSQGSVESLR 267

  Fly   264 KLQRNRTSFSNEQIDSLEKEFERTHYPDVF-----ARERLADKIGLPEARIQVWFSNRRAKWRRE 323
            |..| ..:|:.:|:::|::.|||..|||||     .:...|::..||                  
Zfish   268 KHLR-ADAFTQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLP------------------ 313

  Fly   324 EKMRTQRRSADTVDGSGRTSTANNPSGTTASSSVATSNNSTPGIVNSAINVAERTSSALVSNSLP 388
                                 |.||.......|::||.:|..|              :.||.|.|
Zfish   314 ---------------------ALNPGLDEVKPSLSTSVSSDLG--------------SSVSQSYP 343

  Fly   389 EASNGPTVLGGEANTTHTSS----ESPPLQPAAPRLPLNSGFNTMYSSIP-QPIATMAENYNSSL 448
            ..:.           :|:||    :.|.....||..|.:...:.:...:| ||        :.|:
Zfish   344 VVTE-----------SHSSSMCVKQEPHEASLAPFTPSSLAVSGLAELLPLQP--------SVSV 389

  Fly   449 GSMTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRNTACNPSAAH----------QQP--PQHGVY 501
            .:.|| |.   .||                |||..:.|..::.|          ..|  |.|...
Zfish   390 DASTP-CY---GAY----------------AHHAPSYCQYTSQHIIAGREMASTTLPGYPPHVPP 434

  Fly   502 TNSSPMPSSNTGVISAGVSVPVQISTQNVSDLTGSNY 538
            |.....|:|....:..|            ||.:|:.|
Zfish   435 TGQGSYPTSTLAGMVPG------------SDFSGNPY 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 94/130 (72%)
COG5576 <253..368 CDD:227863 28/119 (24%)
Homeobox 269..322 CDD:395001 14/57 (25%)
pax2aXP_021336168.1 PAX 19..150 CDD:128645 94/130 (72%)
Pax2_C 391..500 CDD:315141 21/101 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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