DRSC/TRiP Functional Genomics Resources

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Protein Alignment toy and pax-1

DIOPT Version :10

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_505120.1 Gene:pax-1 / 187105 WormBaseID:WBGene00003937 Length:257 Species:Caenorhabditis elegans


Alignment Length:210 Identity:96/210 - (45%)
Similarity:127/210 - (60%) Gaps:27/210 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 HSSVGQSTLF--GCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNG 76
            :||:..|:.:  ..|.|..:.:||||||:|||||||...|.|||||:..|.|||||||.|::|:|
 Worm    44 YSSISTSSGYAPANSPAKTAEVNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHG 108

  Fly    77 CVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDN 141
            ||||||.|:.|.|:|.|..||||:|||.|..||:.|...||..|.||||||||||:|..:|:..|
 Worm   109 CVSKILTRFSENGTIMPGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRAN 173

  Fly   142 IPSVSSINRVLRN--------------------LASQKEQQAQQQNESVYEKLRMFNGQTGGWAW 186
            :||||||:|:|||                    ||.|::||..||::.:.......|..:|...:
 Worm   174 LPSVSSISRILRNKNGGNSSSSSSSQLRYIRDQLAEQQQQQHLQQHQYMEYNNNELNQISGNLDY 238

  Fly   187 YPSNTTTAHLTLPPA 201
            ..|::.|     ||:
 Worm   239 QVSSSNT-----PPS 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 75/123 (61%)
COG5576 <253..368 CDD:227863
Homeodomain 267..322 CDD:459649
pax-1NP_505120.1 PAX 61..185 CDD:128645 75/123 (61%)
Blue background indicates that the domain is not in the aligned region.

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