DRSC/TRiP Functional Genomics Resources

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Protein Alignment toy and npax-2

DIOPT Version :10

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_508396.3 Gene:npax-2 / 185967 WormBaseID:WBGene00018591 Length:233 Species:Caenorhabditis elegans


Alignment Length:169 Identity:62/169 - (36%)
Similarity:87/169 - (51%) Gaps:18/169 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SSVGQSTLFGCST---------------AGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARP 64
            |..|..:...||:               |..||.||||..|..|.||....|::||:|...|.:.
 Worm    68 SDSGSPSSLSCSSLDYDVPPPPQYEKDVARSSGRNQLGRTYSPGLPLSMCEREEIVKLFQGGWKI 132

  Fly    65 CDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRD 129
            ||||:.|.|::.||||||.||.:|||:||:   .:|.....:|:|..:.||:.........|||:
 Worm   133 CDISKRLCVTHSCVSKILNRYRQTGSVKPK---DAKEGRTESPLVLAVRDYRSRLGMCRQSEIRE 194

  Fly   130 RLLSEQVCNSDNIPSVSSINRVLRNLASQKEQQAQQQNE 168
            :|:.:.||..||.||.||||.:||.....|.::....:|
 Worm   195 QLIRDGVCTRDNAPSRSSINHILRTKLDIKRRKKSLADE 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 53/123 (43%)
COG5576 <253..368 CDD:227863
Homeodomain 267..322 CDD:459649
npax-2NP_508396.3 PAX 97..218 CDD:128645 53/123 (43%)
Blue background indicates that the domain is not in the aligned region.

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