DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toy and Pax6

DIOPT Version :9

Sequence 1:NP_001368990.1 Gene:toy / 43833 FlyBaseID:FBgn0019650 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001231127.1 Gene:Pax6 / 18508 MGIID:97490 Length:436 Species:Mus musculus


Alignment Length:542 Identity:271/542 - (50%)
Similarity:315/542 - (58%) Gaps:138/542 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQ--------------VSNGCVSK 80
            |||:||||||:||||||||||||||||||||||||||||||||              ||||||||
Mouse     5 HSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSNGCVSK 69

  Fly    81 ILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSV 145
            |||||||||||:|||||||||||||..||.|||.||||||||||||||||||||.||.:||||||
Mouse    70 ILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 134

  Fly   146 SSINRVLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGW----AWYPSNTTTAHLTLPPAASVVT 206
            ||||||||||||:|:|...   :.:|:||||.|||||.|    .|||.                 
Mouse   135 SSINRVLRNLASEKQQMGA---DGMYDKLRMLNGQTGSWGTRPGWYPG----------------- 179

  Fly   207 SPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHNSSGDEDSQMRLRLKRKLQRNRTS 271
              .::.||..:|..|::|    ....:|||..|        |....:::||||:|||||||||||
Mouse   180 --TSVPGQPTQDGCQQQE----GGGENTNSISS--------NGEDSDEAQMRLQLKRKLQRNRTS 230

  Fly   272 FSNEQIDSLEKEFERTHYPDVFARERLADKIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTV 336
            |:.|||::||||||||||||||||||||.||.||||||||||||||||||||||:|.|||.|   
Mouse   231 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQA--- 292

  Fly   337 DGSGRTSTANNPSGTTASSSVATS------NNSTPGIVNSAINVAERTSSALVSNSLPEASNGPT 395
                    :|.||....|||.:||      ..:||        |:..||.:::            
Mouse   293 --------SNTPSHIPISSSFSTSVYQPIPQPTTP--------VSSFTSGSML------------ 329

  Fly   396 VLGGEANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSI-PQPIATMAENYNSSLGSMTPSCLQQR 459
               |..:|..|::                     ||:: |.|..|||.|.     .|.|....|.
Mouse   330 ---GRTDTALTNT---------------------YSALPPMPSFTMANNL-----PMQPPVPSQT 365

  Fly   460 DAYPYMFHDPLSLGSPYVSAHHRNTACNPSAAHQQPPQHGVYTNSSPMPSS---NTGVISAGVSV 521
            .:|..|...     ||.|:....:|        ..||....:.||.||.:|   :||:||.||||
Mouse   366 SSYSCMLPT-----SPSVNGRSYDT--------YTPPHMQTHMNSQPMGTSGTTSTGLISPGVSV 417

  Fly   522 PVQISTQNVSDLTGSNYWPRLQ 543
            |||:..   |:...|.||||||
Mouse   418 PVQVPG---SEPDMSQYWPRLQ 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toyNP_001368990.1 PAX 29..153 CDD:128645 112/136 (82%)
COG5576 <253..368 CDD:227863 78/120 (65%)
Homeobox 269..322 CDD:395001 46/52 (88%)
Pax6NP_001231127.1 PAX 4..142 CDD:128645 112/136 (82%)
Homeobox 228..281 CDD:395001 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6449
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1212
Inparanoid 1 1.050 430 1.000 Inparanoid score I1715
Isobase 1 0.950 - 0 Normalized mean entropy S2514
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002521
OrthoInspector 1 1.000 - - oto94498
orthoMCL 1 0.900 - - OOG6_105713
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 1 1.000 - - X2218
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.800

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